PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Protein/Isoform Record Pathway Family Confidence Status
BnigB7G0010910.1 Rosmarinic Acid C4H low borderline
BnigB7G0011940.1 Rosmarinic Acid C4H low borderline
BnigB7G0015070.1 Rosmarinic Acid C4H low borderline
BnigB7G0015950.1 Rosmarinic Acid C4H low borderline
BnigB7G0019370.1 Rosmarinic Acid C4H medium pass
BnigB7G0025880.1 Rosmarinic Acid C4H low borderline
BnigB7G0025930.1 Rosmarinic Acid C4H low borderline
BnigB7G0028150.1 Rosmarinic Acid C4H low borderline
BnigB7G0028580.1 Rosmarinic Acid C4H low borderline
BnigB7G0035760.1 Rosmarinic Acid C4H low borderline
BnigB7G0035770.1 Rosmarinic Acid C4H low borderline
BnigB7G0039650.1 Rosmarinic Acid C4H medium pass
BnigB7G0040580.1 Rosmarinic Acid C4H medium pass
BnigB7G0046460.1 Rosmarinic Acid C4H low borderline
BnigB7G0048400.1 Rosmarinic Acid C4H low borderline
BnigB7G0049410.1 Rosmarinic Acid C4H low borderline
BnigB7G0052420.1 Rosmarinic Acid C4H low borderline
BnigB7G0053740.1 Rosmarinic Acid C4H low borderline
BnigB7G0053750.1 Rosmarinic Acid C4H low borderline
BnigB7G0053760.1 Rosmarinic Acid C4H low borderline
BnigB7G0053770.1 Rosmarinic Acid C4H medium pass
BnigB7G0054760.1 Rosmarinic Acid C4H low borderline
BnigB8G0001510.1 Rosmarinic Acid C4H low borderline
BnigB8G0001520.1 Rosmarinic Acid C4H low borderline
BnigB8G0001580.1 Rosmarinic Acid C4H medium pass
BnigB8G0001590.1 Rosmarinic Acid C4H low borderline
BnigB8G0001600.1 Rosmarinic Acid C4H low borderline
BnigB8G0003800.1 Rosmarinic Acid C4H low borderline
BnigB8G0004510.1 Rosmarinic Acid C4H low borderline
BnigB8G0004520.1 Rosmarinic Acid C4H medium pass
BnigB8G0004830.1 Rosmarinic Acid C4H medium pass
BnigB8G0008950.1 Rosmarinic Acid C4H low borderline
BnigB8G0008960.1 Rosmarinic Acid C4H low borderline
BnigB8G0008970.1 Rosmarinic Acid C4H low borderline
BnigB8G0009990.1 Rosmarinic Acid C4H medium pass
BnigB8G0011060.1 Rosmarinic Acid C4H low borderline
BnigB8G0015880.1 Rosmarinic Acid C4H medium pass
BnigB8G0016120.1 Rosmarinic Acid C4H low borderline
BnigB8G0016150.1 Rosmarinic Acid C4H low borderline
BnigB8G0022570.1 Rosmarinic Acid C4H low borderline
BnigB8G0027680.1 Rosmarinic Acid C4H low borderline
BnigB8G0027690.1 Rosmarinic Acid C4H low borderline
BnigB8G0028270.1 Rosmarinic Acid C4H low borderline
BnigB8G0029400.1 Rosmarinic Acid C4H low borderline
BnigB8G0031070.1 Rosmarinic Acid C4H low borderline
BnigB8G0031080.1 Rosmarinic Acid C4H low borderline
BnigB8G0031330.1 Rosmarinic Acid C4H low borderline
BnigB8G0031630.1 Rosmarinic Acid C4H low borderline
BnigB8G0031650.1 Rosmarinic Acid C4H low borderline
BnigB8G0031700.1 Rosmarinic Acid C4H low borderline