PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 31.38% Phenylpropanoid pathway 20.95% Alkaloid pathway 20.02% Flavonoid pathway 12.73% Rosmarinic acid pathway 8.81% Steroid pathway 6.12%
Family Distribution
BAHD 6.93% C4H 6.56% C3'H/CYP98A 6.0% CYP76 4.07% POD 3.95% IFS 3.76% UGT 3.66% T3O 3.62%
Other Families 61.44%
More Families (97)
UFGT 172 3.33% 4CL 171 3.31% 7DLGT 168 3.25% F3H 156 3.02% DWF4/CYP90B1 136 2.63% NMT 123 2.38% F3'H/CYP75B 99 1.92% CODM/T6ODM 96 1.86% BR6OX2/CYP85A2 96 1.86% STR 87 1.68% CYP71 84 1.63% H6H 79 1.53% SMT1/SMT2/SMT3 79 1.53% TRI/TRII 71 1.37% CSE 60 1.16% T16H 51 0.99% CAD 51 0.99% SGD 49 0.95% IFR 49 0.95% BBE 47 0.91% PYKS 46 0.89% PAL 45 0.87% COMT 44 0.85% LAC 42 0.81% CYP90D1 42 0.81% IO 41 0.79% CAS 41 0.79% TPS 39 0.76% GES 37 0.72% LAMT 36 0.7% F3'5'H/CYP75A 36 0.7% F5H/CYP84A 35 0.68% TAT 35 0.68% RAS 35 0.68% ANR 33 0.64% G8O/G8H 30 0.58% 16OMT 30 0.58% HCT 30 0.58% FNS 28 0.54% CCR 26 0.5% CPD/CYP90A1 25 0.48% 7DLH 24 0.46% SLS 23 0.45% GS 23 0.45% ANS/LDOX 21 0.41% 8HGO 20 0.39% BR6OX1/CYP85A1 20 0.39% GGPPS 20 0.39% CPR 19 0.37% PMT 18 0.35% CYP51G1 18 0.35% COR 15 0.29% FPPS 15 0.29% NCS 13 0.25% CCoAOMT 12 0.23% SQS/FDFT1 12 0.23% SQE 11 0.21% ADC 10 0.19% CHS 10 0.19% DFR 10 0.19% AACT 10 0.19% CNMT 9 0.17% CYP80B1 9 0.17% ROT3/CYP90C1 9 0.17% MPO 8 0.15% TYDC_DDC 8 0.15% DWF7 8 0.15% SMO1/SMO2 8 0.15% MVD 8 0.15% CYP719 7 0.14% ISY 7 0.14% HPPR 7 0.14% CHI 6 0.12% MVK 6 0.12% TDC 5 0.1% PMK 5 0.1% IDI 5 0.1% DXS 5 0.1% HMGR 5 0.1% DET2 4 0.08% HDR/IspH 4 0.08% MCT/IspD 4 0.08% XMT_MXMT_DXMT 3 0.06% FLS 3 0.06% DWF5 3 0.06% DWF1 3 0.06% CPI1 3 0.06% FK 3 0.06% HYD1 3 0.06% DXR 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% ODC 1 0.02% 6OMT_4OMT_SOMT 1 0.02% CYP80F1 1 0.02% CMK/IspE 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Bnigscaffold_312.10035160.1 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
Bnigscaffold_42.10043640.1 Terpenoid CYP76 low borderline CYP76__00015__sp_P0DKI2_C76AN_BETVU
Bnigscaffold_44.20047460.1 Terpenoid CYP76 medium pass CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
Bnigscaffold_47.10048790.1 Terpenoid CYP76 medium pass CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
Bnigscaffold_47.10048820.1 Terpenoid CYP76 medium pass CYP76__00008__sp_A0A1D8QMG4_C76K8_ROSOF
Bnigscaffold_514.10051480.1 Terpenoid CYP76 medium borderline CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
Bnigscaffold_67.10059580.1 Terpenoid CYP76 low borderline CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
Bnigscaffold_678.10060620.1 Terpenoid CYP76 medium pass CYP76__00016__sp_P0DXJ6_C7631_LOPWI
Bnigscaffold_678.10060640.1 Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
Bnigscaffold_82.10065010.1 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO