PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
BnigB3G0044300.1 Flavonoid F3H medium borderline
BnigB3G0044310.1 Flavonoid F3H medium borderline
BnigB3G0044610.1 Flavonoid F3H low borderline
BnigB3G0044620.1 Flavonoid F3H medium borderline
BnigB3G0046530.1 Flavonoid F3H medium borderline
BnigB3G0053850.1 Flavonoid F3H medium borderline
BnigB3G0054600.1 Flavonoid F3H medium borderline
BnigB4G0003500.1 Flavonoid F3H medium borderline
BnigB4G0007920.1 Flavonoid F3H medium borderline
BnigB4G0010490.1 Flavonoid F3H medium borderline
BnigB4G0011720.1 Flavonoid F3H medium borderline
BnigB4G0016580.1 Flavonoid F3H medium borderline
BnigB4G0020720.1 Flavonoid F3H medium borderline
BnigB4G0022020.1 Flavonoid F3H medium borderline
BnigB4G0024920.1 Flavonoid F3H low borderline
BnigB4G0025900.1 Flavonoid F3H medium borderline
BnigB4G0027060.1 Flavonoid F3H medium borderline
BnigB4G0028570.1 Flavonoid F3H medium borderline
BnigB4G0028590.1 Flavonoid F3H medium borderline
BnigB4G0028610.1 Flavonoid F3H low borderline
BnigB4G0029160.1 Flavonoid F3H medium borderline
BnigB4G0029540.1 Flavonoid F3H medium borderline
BnigB4G0030720.1 Flavonoid F3H medium borderline
BnigB4G0030760.1 Flavonoid F3H medium borderline
BnigB4G0030770.1 Flavonoid F3H medium borderline
BnigB4G0030780.1 Flavonoid F3H low borderline
BnigB4G0031530.1 Flavonoid F3H medium borderline
BnigB4G0031540.1 Flavonoid F3H medium borderline
BnigB4G0031910.1 Flavonoid F3H medium borderline
BnigB4G0043960.1 Flavonoid F3H medium borderline
BnigB4G0045720.1 Flavonoid F3H medium borderline
BnigB4G0049290.1 Flavonoid F3H medium borderline
BnigB5G0006220.1 Flavonoid F3H medium borderline
BnigB5G0008340.1 Flavonoid F3H medium borderline
BnigB5G0010330.1 Flavonoid F3H low borderline
BnigB5G0010340.1 Flavonoid F3H low borderline
BnigB5G0013600.1 Flavonoid F3H medium borderline
BnigB5G0013610.1 Flavonoid F3H medium borderline
BnigB5G0016430.1 Flavonoid F3H medium borderline
BnigB5G0024500.1 Flavonoid F3H medium borderline
BnigB5G0034520.1 Flavonoid F3H medium borderline
BnigB5G0034530.1 Flavonoid F3H medium borderline
BnigB5G0039680.1 Flavonoid F3H medium borderline
BnigB5G0041560.1 Flavonoid F3H medium borderline
BnigB5G0042570.1 Flavonoid F3H medium borderline
BnigB5G0049740.1 Flavonoid F3H medium borderline
BnigB5G0049750.1 Flavonoid F3H medium borderline
BnigB6G0007640.1 Flavonoid F3H low borderline
BnigB6G0007650.1 Flavonoid F3H low borderline
BnigB6G0007660.1 Flavonoid F3H low borderline