PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
BnigB6G0007690.1 Flavonoid F3H low borderline
BnigB6G0007700.1 Flavonoid F3H low borderline
BnigB6G0022440.1 Flavonoid F3H medium borderline
BnigB6G0022650.1 Flavonoid F3H medium borderline
BnigB6G0022950.1 Flavonoid F3H medium borderline
BnigB6G0025460.1 Flavonoid F3H medium borderline
BnigB6G0027920.1 Flavonoid F3H low borderline
BnigB6G0030930.1 Flavonoid F3H low borderline
BnigB6G0035870.1 Flavonoid F3H medium borderline
BnigB7G0004020.1 Flavonoid F3H medium borderline
BnigB7G0007410.1 Flavonoid F3H medium borderline
BnigB7G0022120.1 Flavonoid F3H medium borderline
BnigB7G0022130.1 Flavonoid F3H medium borderline
BnigB7G0025000.1 Flavonoid F3H low borderline
BnigB7G0028080.1 Flavonoid F3H low borderline
BnigB7G0028090.1 Flavonoid F3H low borderline
BnigB7G0035780.1 Flavonoid F3H medium borderline
BnigB7G0035790.1 Flavonoid F3H medium borderline
BnigB7G0036540.1 Flavonoid F3H medium borderline
BnigB7G0039860.1 Flavonoid F3H medium borderline
BnigB7G0040000.1 Flavonoid F3H medium borderline
BnigB7G0047020.1 Flavonoid F3H medium borderline
BnigB7G0047040.1 Flavonoid F3H medium borderline
BnigB7G0047050.1 Flavonoid F3H medium borderline
BnigB7G0053270.1 Flavonoid F3H low borderline
BnigB7G0057060.1 Flavonoid F3H medium borderline
BnigB7G0057070.1 Flavonoid F3H medium borderline
BnigB8G0005640.1 Flavonoid F3H medium borderline
BnigB8G0019580.1 Flavonoid F3H medium borderline
BnigB8G0022320.1 Flavonoid F3H low borderline
BnigB8G0028860.1 Flavonoid F3H medium borderline
BnigB8G0029690.1 Flavonoid F3H medium borderline
BnigB8G0029960.1 Flavonoid F3H medium borderline
BnigB8G0034970.1 Flavonoid F3H medium borderline
BnigB8G0035560.1 Flavonoid F3H medium borderline
BnigB8G0038390.1 Flavonoid F3H medium borderline
BnigB8G0041340.1 Flavonoid F3H low borderline
BnigB8G0048180.1 Flavonoid F3H medium borderline
BnigB8G0050180.1 Flavonoid F3H medium borderline
BnigB8G0051930.1 Flavonoid F3H medium borderline
BnigB8G0054480.1 Flavonoid F3H medium borderline
BnigB8G0057030.1 Flavonoid F3H medium borderline
Bnigscaffold_10.10004940.1 Flavonoid F3H medium borderline
Bnigscaffold_10.10005050.1 Flavonoid F3H medium borderline
Bnigscaffold_10.10006290.1 Flavonoid F3H low borderline
Bnigscaffold_1609.10016970.1 Flavonoid F3H low borderline
Bnigscaffold_171.10017960.1 Flavonoid F3H medium borderline
Bnigscaffold_193.10020430.1 Flavonoid F3H medium borderline
Bnigscaffold_208.10021970.1 Flavonoid F3H medium borderline
Bnigscaffold_325.10035730.1 Flavonoid F3H low borderline