Brassica nigra (brassica_nigra)
Imported from atlas release summary for Brassica nigra.
2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2043
Candidate Genes
BAHD
6.93%
C4H
6.56%
C3'H/CYP98A
6.0%
CYP76
4.07%
POD
3.95%
IFS
3.76%
UGT
3.66%
T3O
3.62%
Other Families
61.44%
More Families (97)
UFGT
172
3.33%
4CL
171
3.31%
7DLGT
168
3.25%
F3H
156
3.02%
DWF4/CYP90B1
136
2.63%
NMT
123
2.38%
F3'H/CYP75B
99
1.92%
CODM/T6ODM
96
1.86%
BR6OX2/CYP85A2
96
1.86%
STR
87
1.68%
CYP71
84
1.63%
H6H
79
1.53%
SMT1/SMT2/SMT3
79
1.53%
TRI/TRII
71
1.37%
CSE
60
1.16%
T16H
51
0.99%
CAD
51
0.99%
SGD
49
0.95%
IFR
49
0.95%
BBE
47
0.91%
PYKS
46
0.89%
PAL
45
0.87%
COMT
44
0.85%
LAC
42
0.81%
CYP90D1
42
0.81%
IO
41
0.79%
CAS
41
0.79%
TPS
39
0.76%
GES
37
0.72%
LAMT
36
0.7%
F3'5'H/CYP75A
36
0.7%
F5H/CYP84A
35
0.68%
TAT
35
0.68%
RAS
35
0.68%
ANR
33
0.64%
G8O/G8H
30
0.58%
16OMT
30
0.58%
HCT
30
0.58%
FNS
28
0.54%
CCR
26
0.5%
CPD/CYP90A1
25
0.48%
7DLH
24
0.46%
SLS
23
0.45%
GS
23
0.45%
ANS/LDOX
21
0.41%
8HGO
20
0.39%
BR6OX1/CYP85A1
20
0.39%
GGPPS
20
0.39%
CPR
19
0.37%
PMT
18
0.35%
CYP51G1
18
0.35%
COR
15
0.29%
FPPS
15
0.29%
NCS
13
0.25%
CCoAOMT
12
0.23%
SQS/FDFT1
12
0.23%
SQE
11
0.21%
ADC
10
0.19%
CHS
10
0.19%
DFR
10
0.19%
AACT
10
0.19%
CNMT
9
0.17%
CYP80B1
9
0.17%
ROT3/CYP90C1
9
0.17%
MPO
8
0.15%
TYDC_DDC
8
0.15%
DWF7
8
0.15%
SMO1/SMO2
8
0.15%
MVD
8
0.15%
CYP719
7
0.14%
ISY
7
0.14%
HPPR
7
0.14%
CHI
6
0.12%
MVK
6
0.12%
TDC
5
0.1%
PMK
5
0.1%
IDI
5
0.1%
DXS
5
0.1%
HMGR
5
0.1%
DET2
4
0.08%
HDR/IspH
4
0.08%
MCT/IspD
4
0.08%
XMT_MXMT_DXMT
3
0.06%
FLS
3
0.06%
DWF5
3
0.06%
DWF1
3
0.06%
CPI1
3
0.06%
FK
3
0.06%
HYD1
3
0.06%
DXR
2
0.04%
HMGS
2
0.04%
MDS/IspF
2
0.04%
ODC
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
CYP80F1
1
0.02%
CMK/IspE
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 641 | 19 | BAHD (288) | View species results |
| Phenylpropanoid pathway | 428 | 12 | POD (188) | View species results |
| Alkaloid pathway | 409 | 20 | 7DLGT (76) | View species results |
| Flavonoid pathway | 260 | 12 | UFGT (169) | View species results |
| Rosmarinic acid pathway | 180 | 7 | C4H (80) | View species results |
| Steroid pathway | 125 | 14 | SMT1/SMT2/SMT3 (45) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2026 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 423 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| BnigB1G0013030.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| BnigB1G0013570.1 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| BnigB1G0016000.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| BnigB1G0028750.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| BnigB2G0004640.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| BnigB2G0004990.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| BnigB2G0006520.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| BnigB2G0015590.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| BnigB2G0025330.1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| BnigB2G0028660.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| BnigB2G0030680.1 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| BnigB2G0032490.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| BnigB2G0032960.1 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| BnigB2G0036250.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| BnigB2G0036650.1 | Alkaloid | NMT | medium | pass | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| BnigB2G0036660.1 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| BnigB2G0036690.1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| BnigB2G0037450.1 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| BnigB2G0048610.1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| BnigB2G0049970.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| BnigB2G0053500.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| BnigB2G0054600.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| BnigB3G0007600.1 | Alkaloid | NMT | low | borderline | NMT__00039__sp_Q84W92_ANM13_ARATH |
| BnigB3G0027920.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| BnigB3G0035740.1 | Alkaloid | NMT | low | borderline | NMT__00039__sp_Q84W92_ANM13_ARATH |
| BnigB3G0045420.1 | Alkaloid | NMT | low | borderline | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| BnigB3G0050220.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| BnigB3G0050360.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| BnigB3G0054220.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| BnigB4G0002940.1 | Alkaloid | NMT | medium | pass | NMT__00019__sp_O22781_SUVH2_ARATH |
| BnigB4G0009000.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| BnigB4G0015190.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| BnigB4G0022710.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| BnigB4G0026310.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| BnigB4G0034650.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| BnigB4G0035380.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| BnigB4G0039360.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| BnigB4G0047120.1 | Alkaloid | NMT | medium | pass | NMT__00062__sp_Q9SCP7_NAMT1_ARATH |
| BnigB4G0048910.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| BnigB5G0001360.1 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| BnigB5G0003290.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| BnigB5G0007290.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| BnigB5G0012500.1 | Alkaloid | NMT | medium | borderline | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| BnigB5G0014770.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| BnigB5G0014990.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| BnigB5G0016570.1 | Alkaloid | NMT | low | borderline | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| BnigB5G0024320.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| BnigB5G0024410.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| BnigB5G0024430.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| BnigB5G0027940.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |