Brassica nigra (brassica_nigra)
Imported from atlas release summary for Brassica nigra.
2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2043
Candidate Genes
BAHD
6.93%
C4H
6.56%
C3'H/CYP98A
6.0%
CYP76
4.07%
POD
3.95%
IFS
3.76%
UGT
3.66%
T3O
3.62%
Other Families
61.44%
More Families (97)
UFGT
172
3.33%
4CL
171
3.31%
7DLGT
168
3.25%
F3H
156
3.02%
DWF4/CYP90B1
136
2.63%
NMT
123
2.38%
F3'H/CYP75B
99
1.92%
CODM/T6ODM
96
1.86%
BR6OX2/CYP85A2
96
1.86%
STR
87
1.68%
CYP71
84
1.63%
H6H
79
1.53%
SMT1/SMT2/SMT3
79
1.53%
TRI/TRII
71
1.37%
CSE
60
1.16%
T16H
51
0.99%
CAD
51
0.99%
SGD
49
0.95%
IFR
49
0.95%
BBE
47
0.91%
PYKS
46
0.89%
PAL
45
0.87%
COMT
44
0.85%
LAC
42
0.81%
CYP90D1
42
0.81%
IO
41
0.79%
CAS
41
0.79%
TPS
39
0.76%
GES
37
0.72%
LAMT
36
0.7%
F3'5'H/CYP75A
36
0.7%
F5H/CYP84A
35
0.68%
TAT
35
0.68%
RAS
35
0.68%
ANR
33
0.64%
G8O/G8H
30
0.58%
16OMT
30
0.58%
HCT
30
0.58%
FNS
28
0.54%
CCR
26
0.5%
CPD/CYP90A1
25
0.48%
7DLH
24
0.46%
SLS
23
0.45%
GS
23
0.45%
ANS/LDOX
21
0.41%
8HGO
20
0.39%
BR6OX1/CYP85A1
20
0.39%
GGPPS
20
0.39%
CPR
19
0.37%
PMT
18
0.35%
CYP51G1
18
0.35%
COR
15
0.29%
FPPS
15
0.29%
NCS
13
0.25%
CCoAOMT
12
0.23%
SQS/FDFT1
12
0.23%
SQE
11
0.21%
ADC
10
0.19%
CHS
10
0.19%
DFR
10
0.19%
AACT
10
0.19%
CNMT
9
0.17%
CYP80B1
9
0.17%
ROT3/CYP90C1
9
0.17%
MPO
8
0.15%
TYDC_DDC
8
0.15%
DWF7
8
0.15%
SMO1/SMO2
8
0.15%
MVD
8
0.15%
CYP719
7
0.14%
ISY
7
0.14%
HPPR
7
0.14%
CHI
6
0.12%
MVK
6
0.12%
TDC
5
0.1%
PMK
5
0.1%
IDI
5
0.1%
DXS
5
0.1%
HMGR
5
0.1%
DET2
4
0.08%
HDR/IspH
4
0.08%
MCT/IspD
4
0.08%
XMT_MXMT_DXMT
3
0.06%
FLS
3
0.06%
DWF5
3
0.06%
DWF1
3
0.06%
CPI1
3
0.06%
FK
3
0.06%
HYD1
3
0.06%
DXR
2
0.04%
HMGS
2
0.04%
MDS/IspF
2
0.04%
ODC
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
CYP80F1
1
0.02%
CMK/IspE
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 641 | 19 | BAHD (288) | View species results |
| Phenylpropanoid pathway | 428 | 12 | POD (188) | View species results |
| Alkaloid pathway | 409 | 20 | 7DLGT (76) | View species results |
| Flavonoid pathway | 260 | 12 | UFGT (169) | View species results |
| Rosmarinic acid pathway | 180 | 7 | C4H (80) | View species results |
| Steroid pathway | 125 | 14 | SMT1/SMT2/SMT3 (45) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2026 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 423 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| BnigB5G0033790.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB5G0041410.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB5G0041840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB5G0041900.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB5G0043180.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB5G0047660.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BnigB6G0000630.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB6G0005460.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB6G0007290.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB6G0007320.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB6G0012590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB6G0013460.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BnigB6G0031320.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB6G0032530.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB7G0013520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB7G0023760.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB7G0027030.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| BnigB7G0027040.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| BnigB7G0028100.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB7G0052050.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB7G0052920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB8G0003910.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB8G0018760.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BnigB8G0020480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB8G0025540.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB8G0030580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB8G0037600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB8G0043550.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BnigB8G0046590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bnigscaffold_10.10003940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bnigscaffold_1185.10009840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bnigscaffold_130.10014450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bnigscaffold_257.10025520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bnigscaffold_344.10037280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bnigscaffold_427.10045070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bnigscaffold_427.10045090.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bnigscaffold_678.10060400.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |