PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
BnigB4G0009570.1 Alkaloid T3O medium pass
BnigB4G0011610.1 Alkaloid T3O low borderline
BnigB4G0014210.1 Alkaloid T3O medium borderline
BnigB4G0014250.1 Alkaloid T3O medium borderline
BnigB4G0015450.1 Alkaloid T3O medium pass
BnigB4G0016510.1 Alkaloid T3O medium pass
BnigB4G0029710.1 Alkaloid T3O medium pass
BnigB4G0037370.1 Alkaloid T3O low borderline
BnigB4G0037380.1 Alkaloid T3O low borderline
BnigB4G0038890.1 Alkaloid T3O medium borderline
BnigB4G0043590.1 Alkaloid T3O medium borderline
BnigB4G0043600.1 Alkaloid T3O medium borderline
BnigB4G0048130.1 Alkaloid T3O medium borderline
BnigB5G0008420.1 Alkaloid T3O medium pass
BnigB5G0013920.1 Alkaloid T3O medium pass
BnigB5G0014800.1 Alkaloid T3O medium borderline
BnigB5G0014850.1 Alkaloid T3O medium borderline
BnigB5G0028330.1 Alkaloid T3O low borderline
BnigB5G0032790.1 Alkaloid T3O low borderline
BnigB5G0033310.1 Alkaloid T3O medium pass
BnigB5G0040460.1 Alkaloid T3O medium pass
BnigB5G0044880.1 Alkaloid T3O medium borderline
BnigB5G0045510.1 Alkaloid T3O medium borderline
BnigB5G0045700.1 Alkaloid T3O medium borderline
BnigB5G0046220.1 Alkaloid T3O medium pass
BnigB5G0048310.1 Alkaloid T3O medium borderline
BnigB5G0050130.1 Alkaloid T3O medium borderline
BnigB5G0050140.1 Alkaloid T3O medium borderline
BnigB5G0050150.1 Alkaloid T3O medium borderline
BnigB5G0050160.1 Alkaloid T3O medium borderline
BnigB5G0050170.1 Alkaloid T3O medium borderline
BnigB5G0050190.1 Alkaloid T3O medium borderline
BnigB6G0011920.1 Alkaloid T3O medium borderline
BnigB6G0011930.1 Alkaloid T3O medium borderline
BnigB6G0016720.1 Alkaloid T3O low borderline
BnigB6G0016750.1 Alkaloid T3O medium borderline
BnigB6G0016760.1 Alkaloid T3O medium borderline
BnigB6G0017030.1 Alkaloid T3O medium pass
BnigB6G0018660.1 Alkaloid T3O medium borderline
BnigB6G0023200.1 Alkaloid T3O medium borderline
BnigB6G0026770.1 Alkaloid T3O medium pass
BnigB6G0029600.1 Alkaloid T3O medium pass
BnigB6G0032790.1 Alkaloid T3O medium borderline
BnigB6G0032810.1 Alkaloid T3O medium borderline
BnigB6G0032820.1 Alkaloid T3O medium borderline
BnigB6G0032830.1 Alkaloid T3O medium borderline
BnigB6G0032850.1 Alkaloid T3O medium borderline
BnigB6G0032860.1 Alkaloid T3O medium borderline
BnigB6G0032890.1 Alkaloid T3O medium borderline
BnigB6G0033810.1 Alkaloid T3O medium borderline