PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
BnigB6G0033830.1 Alkaloid T3O medium borderline
BnigB6G0034230.1 Alkaloid T3O medium pass
BnigB6G0035470.1 Alkaloid T3O medium pass
BnigB6G0036120.1 Alkaloid T3O medium borderline
BnigB7G0010910.1 Alkaloid T3O medium borderline
BnigB7G0011940.1 Alkaloid T3O medium pass
BnigB7G0015060.1 Alkaloid T3O low borderline
BnigB7G0015070.1 Alkaloid T3O low borderline
BnigB7G0019370.1 Alkaloid T3O medium borderline
BnigB7G0025660.1 Alkaloid T3O low borderline
BnigB7G0039650.1 Alkaloid T3O medium borderline
BnigB7G0049410.1 Alkaloid T3O medium borderline
BnigB7G0053740.1 Alkaloid T3O medium borderline
BnigB7G0053760.1 Alkaloid T3O medium borderline
BnigB8G0001510.1 Alkaloid T3O medium borderline
BnigB8G0001520.1 Alkaloid T3O medium borderline
BnigB8G0001580.1 Alkaloid T3O medium borderline
BnigB8G0001590.1 Alkaloid T3O medium borderline
BnigB8G0001600.1 Alkaloid T3O medium borderline
BnigB8G0004520.1 Alkaloid T3O medium borderline
BnigB8G0008970.1 Alkaloid T3O low borderline
BnigB8G0009350.1 Alkaloid T3O medium pass
BnigB8G0009990.1 Alkaloid T3O medium borderline
BnigB8G0011060.1 Alkaloid T3O medium borderline
BnigB8G0018110.1 Alkaloid T3O low borderline
BnigB8G0022570.1 Alkaloid T3O medium borderline
BnigB8G0024810.1 Alkaloid T3O low borderline
BnigB8G0027680.1 Alkaloid T3O medium borderline
BnigB8G0027690.1 Alkaloid T3O medium borderline
BnigB8G0029400.1 Alkaloid T3O medium borderline
BnigB8G0031070.1 Alkaloid T3O medium borderline
BnigB8G0031080.1 Alkaloid T3O medium borderline
BnigB8G0031330.1 Alkaloid T3O medium pass
BnigB8G0032480.1 Alkaloid T3O medium borderline
BnigB8G0034580.1 Alkaloid T3O medium pass
BnigB8G0039230.1 Alkaloid T3O medium borderline
BnigB8G0039260.1 Alkaloid T3O medium borderline
BnigB8G0039670.1 Alkaloid T3O medium pass
BnigB8G0043910.1 Alkaloid T3O medium borderline
BnigB8G0043920.1 Alkaloid T3O medium borderline
BnigB8G0043930.1 Alkaloid T3O medium borderline
BnigB8G0043940.1 Alkaloid T3O medium borderline
BnigB8G0043950.1 Alkaloid T3O medium borderline
BnigB8G0043970.1 Alkaloid T3O medium borderline
BnigB8G0043980.1 Alkaloid T3O medium borderline
BnigB8G0044000.1 Alkaloid T3O medium borderline
BnigB8G0045000.1 Alkaloid T3O low borderline
BnigB8G0045590.1 Alkaloid T3O medium borderline
BnigB8G0046160.1 Alkaloid T3O medium pass
BnigB8G0048470.1 Alkaloid T3O medium borderline