PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Protein/Isoform Record Pathway Family Confidence Status
BnigB1G0001960.1 Flavonoid UFGT medium pass
BnigB1G0002180.1 Flavonoid UFGT medium pass
BnigB1G0003420.1 Flavonoid UFGT medium pass
BnigB1G0003440.1 Flavonoid UFGT medium pass
BnigB1G0011270.1 Flavonoid UFGT medium pass
BnigB1G0014970.1 Flavonoid UFGT medium pass
BnigB1G0014980.1 Flavonoid UFGT medium pass
BnigB1G0014990.1 Flavonoid UFGT medium pass
BnigB1G0020750.1 Flavonoid UFGT high pass
BnigB1G0024590.1 Flavonoid UFGT high pass
BnigB1G0025300.1 Flavonoid UFGT high pass
BnigB1G0029590.1 Flavonoid UFGT high pass
BnigB1G0029800.1 Flavonoid UFGT medium pass
BnigB1G0029840.1 Flavonoid UFGT high pass
BnigB1G0029910.1 Flavonoid UFGT medium pass
BnigB2G0013560.1 Flavonoid UFGT high pass
BnigB2G0017150.1 Flavonoid UFGT medium pass
BnigB2G0017160.1 Flavonoid UFGT medium pass
BnigB2G0017740.1 Flavonoid UFGT medium pass
BnigB2G0017750.1 Flavonoid UFGT medium pass
BnigB2G0019000.1 Flavonoid UFGT medium pass
BnigB2G0020780.1 Flavonoid UFGT high pass
BnigB2G0025070.1 Flavonoid UFGT high pass
BnigB2G0025080.1 Flavonoid UFGT medium pass
BnigB2G0025090.1 Flavonoid UFGT high pass
BnigB2G0035040.1 Flavonoid UFGT high pass
BnigB2G0035080.1 Flavonoid UFGT high pass
BnigB2G0036310.1 Flavonoid UFGT medium pass
BnigB2G0036320.1 Flavonoid UFGT medium pass
BnigB2G0036330.1 Flavonoid UFGT high pass
BnigB2G0036490.1 Flavonoid UFGT medium pass
BnigB2G0036500.1 Flavonoid UFGT high pass
BnigB2G0036520.1 Flavonoid UFGT high pass
BnigB2G0036540.1 Flavonoid UFGT medium pass
BnigB2G0036610.1 Flavonoid UFGT medium pass
BnigB2G0037560.1 Flavonoid UFGT low borderline
BnigB2G0052370.1 Flavonoid UFGT medium pass
BnigB2G0052380.1 Flavonoid UFGT medium pass
BnigB2G0052390.1 Flavonoid UFGT medium pass
BnigB2G0053890.1 Flavonoid UFGT high pass
BnigB3G0003190.1 Flavonoid UFGT high pass
BnigB3G0005690.1 Flavonoid UFGT medium pass
BnigB3G0005700.1 Flavonoid UFGT high pass
BnigB3G0005710.1 Flavonoid UFGT high pass
BnigB3G0005720.1 Flavonoid UFGT medium pass
BnigB3G0013610.1 Flavonoid UFGT high pass
BnigB3G0025830.1 Flavonoid UFGT medium pass
BnigB3G0025840.1 Flavonoid UFGT medium pass
BnigB3G0026020.1 Flavonoid UFGT high pass
BnigB3G0028080.1 Flavonoid UFGT medium pass