PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
BnigB3G0042760.1 Flavonoid FNS low borderline
BnigB4G0018290.1 Flavonoid FNS medium borderline
BnigB4G0018490.1 Flavonoid FNS medium borderline
BnigB4G0018750.1 Flavonoid FNS medium borderline
BnigB4G0042280.1 Flavonoid FNS medium borderline
BnigB4G0042330.1 Flavonoid FNS medium borderline
BnigB5G0007770.1 Flavonoid FNS medium borderline
BnigB5G0014830.1 Flavonoid FNS medium borderline
BnigB5G0014840.1 Flavonoid FNS medium borderline
BnigB5G0046220.1 Flavonoid FNS medium borderline
BnigB6G0016420.1 Flavonoid FNS medium borderline
BnigB6G0034970.1 Flavonoid FNS medium borderline
BnigB6G0035940.1 Flavonoid FNS medium borderline
BnigB7G0054730.1 Flavonoid FNS medium borderline
BnigB8G0008970.1 Flavonoid FNS medium borderline
BnigB8G0015180.1 Flavonoid FNS low borderline
BnigB8G0027690.1 Flavonoid FNS medium borderline
BnigB8G0050910.1 Flavonoid FNS medium borderline
BnigB8G0051170.1 Flavonoid FNS low borderline
BnigB8G0055330.1 Flavonoid FNS medium borderline
Bnigscaffold_42.10043640.1 Flavonoid FNS medium borderline
Bnigscaffold_47.10048820.1 Flavonoid FNS low borderline
BnigB1G0000350.1 Flavonoid IFR low borderline
BnigB2G0005820.1 Flavonoid IFR high pass
BnigB2G0005840.1 Flavonoid IFR high pass
BnigB2G0031230.1 Flavonoid IFR low borderline
BnigB2G0039650.1 Flavonoid IFR low borderline
BnigB2G0043650.1 Flavonoid IFR low borderline
BnigB2G0049350.1 Flavonoid IFR low borderline
BnigB2G0052690.1 Flavonoid IFR high pass
BnigB3G0024430.1 Flavonoid IFR low borderline
BnigB3G0026320.1 Flavonoid IFR low borderline
BnigB3G0047520.1 Flavonoid IFR low borderline
BnigB4G0007170.1 Flavonoid IFR low borderline
BnigB4G0021780.1 Flavonoid IFR low borderline
BnigB4G0023680.1 Flavonoid IFR low borderline
BnigB4G0044390.1 Flavonoid IFR low borderline
BnigB4G0046020.1 Flavonoid IFR low borderline
BnigB5G0013520.1 Flavonoid IFR low borderline
BnigB5G0024280.1 Flavonoid IFR low borderline
BnigB5G0037540.1 Flavonoid IFR low borderline
BnigB5G0042160.1 Flavonoid IFR low borderline
BnigB5G0049460.1 Flavonoid IFR medium pass
BnigB6G0006050.1 Flavonoid IFR high pass
BnigB6G0014100.1 Flavonoid IFR low borderline
BnigB6G0016980.1 Flavonoid IFR low borderline
BnigB6G0019710.1 Flavonoid IFR low borderline
BnigB6G0020970.1 Flavonoid IFR low borderline
BnigB7G0002620.1 Flavonoid IFR low borderline
BnigB7G0009920.1 Flavonoid IFR medium pass