PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
BnigB3G0053770.1 Flavonoid UFGT high pass
BnigB4G0001840.1 Flavonoid UFGT medium pass
BnigB4G0007730.1 Flavonoid UFGT medium pass
BnigB4G0007740.1 Flavonoid UFGT medium pass
BnigB4G0007850.1 Flavonoid UFGT medium pass
BnigB4G0007860.1 Flavonoid UFGT medium pass
BnigB4G0007870.1 Flavonoid UFGT medium pass
BnigB4G0007880.1 Flavonoid UFGT medium pass
BnigB4G0008480.1 Flavonoid UFGT medium pass
BnigB4G0014980.1 Flavonoid UFGT medium pass
BnigB4G0024400.1 Flavonoid UFGT high pass
BnigB4G0024930.1 Flavonoid UFGT medium pass
BnigB4G0025580.1 Flavonoid UFGT medium pass
BnigB4G0025590.1 Flavonoid UFGT high pass
BnigB4G0026190.1 Flavonoid UFGT medium pass
BnigB4G0026210.1 Flavonoid UFGT medium pass
BnigB4G0026430.1 Flavonoid UFGT high pass
BnigB4G0028080.1 Flavonoid UFGT medium pass
BnigB4G0028100.1 Flavonoid UFGT medium pass
BnigB4G0030150.1 Flavonoid UFGT medium pass
BnigB4G0030260.1 Flavonoid UFGT medium pass
BnigB4G0037700.1 Flavonoid UFGT high pass
BnigB4G0047110.1 Flavonoid UFGT medium pass
BnigB5G0000510.1 Flavonoid UFGT medium pass
BnigB5G0006340.1 Flavonoid UFGT high pass
BnigB5G0011240.1 Flavonoid UFGT medium pass
BnigB5G0017010.1 Flavonoid UFGT medium pass
BnigB5G0017860.1 Flavonoid UFGT medium pass
BnigB5G0028400.1 Flavonoid UFGT medium pass
BnigB5G0032270.1 Flavonoid UFGT medium pass
BnigB5G0035280.1 Flavonoid UFGT medium pass
BnigB5G0035290.1 Flavonoid UFGT high pass
BnigB5G0035320.1 Flavonoid UFGT medium pass
BnigB5G0037130.1 Flavonoid UFGT medium pass
BnigB5G0041580.1 Flavonoid UFGT medium pass
BnigB5G0041590.1 Flavonoid UFGT medium pass
BnigB6G0003870.1 Flavonoid UFGT medium pass
BnigB6G0005260.1 Flavonoid UFGT medium pass
BnigB6G0005300.1 Flavonoid UFGT medium pass
BnigB7G0007010.1 Flavonoid UFGT medium pass
BnigB7G0023490.1 Flavonoid UFGT high pass
BnigB7G0024620.1 Flavonoid UFGT medium pass
BnigB7G0025800.1 Flavonoid UFGT medium pass
BnigB7G0027080.1 Flavonoid UFGT high pass
BnigB7G0029410.1 Flavonoid UFGT medium pass
BnigB7G0029420.1 Flavonoid UFGT high pass
BnigB7G0029430.1 Flavonoid UFGT medium pass
BnigB7G0029440.1 Flavonoid UFGT medium pass
BnigB7G0029770.1 Flavonoid UFGT low borderline
BnigB7G0033560.1 Flavonoid UFGT low borderline