Brassica nigra (brassica_nigra)
Imported from atlas release summary for Brassica nigra.
2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5164
Family-Level Calls
BAHD
6.93%
C4H
6.56%
C3'H/CYP98A
6.0%
CYP76
4.07%
POD
3.95%
IFS
3.76%
UGT
3.66%
T3O
3.62%
Other Families
61.44%
More Families (97)
UFGT
172
3.33%
4CL
171
3.31%
7DLGT
168
3.25%
F3H
156
3.02%
DWF4/CYP90B1
136
2.63%
NMT
123
2.38%
F3'H/CYP75B
99
1.92%
CODM/T6ODM
96
1.86%
BR6OX2/CYP85A2
96
1.86%
STR
87
1.68%
CYP71
84
1.63%
H6H
79
1.53%
SMT1/SMT2/SMT3
79
1.53%
TRI/TRII
71
1.37%
CSE
60
1.16%
T16H
51
0.99%
CAD
51
0.99%
SGD
49
0.95%
IFR
49
0.95%
BBE
47
0.91%
PYKS
46
0.89%
PAL
45
0.87%
COMT
44
0.85%
LAC
42
0.81%
CYP90D1
42
0.81%
IO
41
0.79%
CAS
41
0.79%
TPS
39
0.76%
GES
37
0.72%
LAMT
36
0.7%
F3'5'H/CYP75A
36
0.7%
F5H/CYP84A
35
0.68%
TAT
35
0.68%
RAS
35
0.68%
ANR
33
0.64%
G8O/G8H
30
0.58%
16OMT
30
0.58%
HCT
30
0.58%
FNS
28
0.54%
CCR
26
0.5%
CPD/CYP90A1
25
0.48%
7DLH
24
0.46%
SLS
23
0.45%
GS
23
0.45%
ANS/LDOX
21
0.41%
8HGO
20
0.39%
BR6OX1/CYP85A1
20
0.39%
GGPPS
20
0.39%
CPR
19
0.37%
PMT
18
0.35%
CYP51G1
18
0.35%
COR
15
0.29%
FPPS
15
0.29%
NCS
13
0.25%
CCoAOMT
12
0.23%
SQS/FDFT1
12
0.23%
SQE
11
0.21%
ADC
10
0.19%
CHS
10
0.19%
DFR
10
0.19%
AACT
10
0.19%
CNMT
9
0.17%
CYP80B1
9
0.17%
ROT3/CYP90C1
9
0.17%
MPO
8
0.15%
TYDC_DDC
8
0.15%
DWF7
8
0.15%
SMO1/SMO2
8
0.15%
MVD
8
0.15%
CYP719
7
0.14%
ISY
7
0.14%
HPPR
7
0.14%
CHI
6
0.12%
MVK
6
0.12%
TDC
5
0.1%
PMK
5
0.1%
IDI
5
0.1%
DXS
5
0.1%
HMGR
5
0.1%
DET2
4
0.08%
HDR/IspH
4
0.08%
MCT/IspD
4
0.08%
XMT_MXMT_DXMT
3
0.06%
FLS
3
0.06%
DWF5
3
0.06%
DWF1
3
0.06%
CPI1
3
0.06%
FK
3
0.06%
HYD1
3
0.06%
DXR
2
0.04%
HMGS
2
0.04%
MDS/IspF
2
0.04%
ODC
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
CYP80F1
1
0.02%
CMK/IspE
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 641 | 19 | BAHD (288) | View species results |
| Phenylpropanoid pathway | 428 | 12 | POD (188) | View species results |
| Alkaloid pathway | 409 | 20 | 7DLGT (76) | View species results |
| Flavonoid pathway | 260 | 12 | UFGT (169) | View species results |
| Rosmarinic acid pathway | 180 | 7 | C4H (80) | View species results |
| Steroid pathway | 125 | 14 | SMT1/SMT2/SMT3 (45) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2026 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 423 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Bnigscaffold_10.10003940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bnigscaffold_1185.10009840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bnigscaffold_130.10014450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bnigscaffold_257.10025520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bnigscaffold_344.10037280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bnigscaffold_427.10045070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bnigscaffold_427.10045090.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bnigscaffold_678.10060400.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BnigB1G0015940.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| BnigB1G0015970.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| BnigB1G0030910.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| BnigB1G0030920.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| BnigB1G0030930.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| BnigB1G0032070.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| BnigB2G0003730.1 | Alkaloid | T16H | low | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB2G0017530.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB2G0018910.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB2G0029390.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| BnigB3G0005510.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB3G0005530.1 | Alkaloid | T16H | medium | pass | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB3G0009270.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB3G0038550.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| BnigB3G0038580.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| BnigB3G0038730.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB3G0038740.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB4G0038160.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB4G0042280.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB4G0042330.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| BnigB5G0014840.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| BnigB5G0027890.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB5G0029280.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| BnigB5G0034200.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB5G0034210.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB5G0037580.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| BnigB5G0037590.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| BnigB5G0048290.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| BnigB5G0050180.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| BnigB6G0016420.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB6G0032590.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| BnigB6G0032840.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB6G0032870.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB6G0034940.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB6G0034970.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| BnigB7G0048400.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB7G0053750.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB7G0053770.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB7G0054730.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB8G0003800.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| BnigB8G0004510.1 | Alkaloid | T16H | medium | pass | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| BnigB8G0008960.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |