PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
BnigB3G0049140.1 Flavonoid 4CL medium pass
BnigB4G0016480.1 Flavonoid 4CL medium pass
BnigB4G0019310.1 Flavonoid 4CL low borderline
BnigB4G0024190.1 Flavonoid 4CL low borderline
BnigB4G0024200.1 Flavonoid 4CL low borderline
BnigB4G0031980.1 Flavonoid 4CL low borderline
BnigB4G0047970.1 Flavonoid 4CL low borderline
BnigB5G0002530.1 Flavonoid 4CL low borderline
BnigB5G0010860.1 Flavonoid 4CL low borderline
BnigB5G0011560.1 Flavonoid 4CL medium pass
BnigB5G0016060.1 Flavonoid 4CL medium pass
BnigB5G0016160.1 Flavonoid 4CL medium pass
BnigB5G0016170.1 Flavonoid 4CL medium pass
BnigB5G0016180.1 Flavonoid 4CL medium pass
BnigB5G0031340.1 Flavonoid 4CL medium pass
BnigB6G0001530.1 Flavonoid 4CL low borderline
BnigB6G0006450.1 Flavonoid 4CL medium pass
BnigB6G0020610.1 Flavonoid 4CL low borderline
BnigB7G0002300.1 Flavonoid 4CL medium pass
BnigB7G0007510.1 Flavonoid 4CL medium pass
BnigB7G0021150.1 Flavonoid 4CL medium pass
BnigB7G0021350.1 Flavonoid 4CL medium pass
BnigB7G0021390.1 Flavonoid 4CL medium pass
BnigB7G0032200.1 Flavonoid 4CL medium pass
BnigB7G0032210.1 Flavonoid 4CL medium pass
BnigB7G0033660.1 Flavonoid 4CL medium pass
BnigB7G0033700.1 Flavonoid 4CL medium pass
BnigB7G0033710.1 Flavonoid 4CL medium pass
BnigB7G0033720.1 Flavonoid 4CL medium pass
BnigB7G0037390.1 Flavonoid 4CL low borderline
BnigB7G0050790.1 Flavonoid 4CL medium pass
BnigB7G0050800.1 Flavonoid 4CL medium pass
BnigB7G0050810.1 Flavonoid 4CL low borderline
BnigB8G0002130.1 Flavonoid 4CL medium pass
BnigB8G0034740.1 Flavonoid 4CL medium pass
BnigB8G0056080.1 Flavonoid 4CL low borderline
Bnigscaffold_130.10014520.1 Flavonoid 4CL low borderline
Bnigscaffold_561.10052630.1 Flavonoid 4CL low borderline
Bnigscaffold_57.10053470.1 Flavonoid 4CL medium pass
Bnigscaffold_82.10064810.1 Flavonoid 4CL low borderline
BnigB1G0002040.1 Flavonoid ANR medium borderline
BnigB1G0006580.1 Flavonoid ANR low borderline
BnigB1G0006620.1 Flavonoid ANR medium pass
BnigB1G0027530.1 Flavonoid ANR medium borderline
BnigB2G0033640.1 Flavonoid ANR low borderline
BnigB4G0004380.1 Flavonoid ANR medium borderline
BnigB4G0021010.1 Flavonoid ANR medium borderline
BnigB4G0048900.1 Flavonoid ANR medium borderline
BnigB5G0036850.1 Flavonoid ANR medium borderline
BnigB5G0038620.1 Flavonoid ANR medium borderline