PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
BnigB4G0029170.1 Flavonoid ANS/LDOX medium borderline
BnigB5G0037620.1 Flavonoid ANS/LDOX medium borderline
BnigB6G0003200.1 Flavonoid ANS/LDOX medium borderline
BnigB7G0004880.1 Flavonoid ANS/LDOX medium borderline
BnigB7G0004920.1 Flavonoid ANS/LDOX medium borderline
BnigB7G0023350.1 Flavonoid ANS/LDOX medium borderline
BnigB7G0026420.1 Flavonoid ANS/LDOX medium borderline
BnigB7G0045130.1 Flavonoid ANS/LDOX medium borderline
BnigB7G0057750.1 Flavonoid ANS/LDOX medium borderline
Bnigscaffold_1406.10015270.1 Flavonoid ANS/LDOX medium borderline
Bnigscaffold_42.10043140.1 Flavonoid ANS/LDOX medium borderline
BnigB2G0017530.1 Flavonoid C4H medium borderline
BnigB2G0036380.1 Flavonoid C4H low borderline
BnigB2G0036400.1 Flavonoid C4H low borderline
BnigB3G0005530.1 Flavonoid C4H low borderline
BnigB3G0038570.1 Flavonoid C4H medium borderline
BnigB3G0038730.1 Flavonoid C4H medium borderline
BnigB3G0038740.1 Flavonoid C4H medium borderline
BnigB4G0037370.1 Flavonoid C4H medium borderline
BnigB5G0034200.1 Flavonoid C4H medium borderline
BnigB6G0024480.1 Flavonoid C4H low borderline
BnigB7G0015070.1 Flavonoid C4H medium borderline
BnigB8G0004830.1 Flavonoid C4H medium borderline
BnigB8G0051220.1 Flavonoid C4H low borderline
BnigB3G0003850.1 Flavonoid CHI medium pass
BnigB3G0003860.1 Flavonoid CHI medium pass
BnigB4G0037880.1 Flavonoid CHI medium pass
BnigB8G0031620.1 Flavonoid CHI medium pass
Bnigscaffold_30.10031770.1 Flavonoid CHI medium pass
Bnigscaffold_30.10031780.1 Flavonoid CHI medium pass
BnigB2G0033120.1 Flavonoid CHS medium pass
BnigB2G0055790.1 Flavonoid CHS medium pass
BnigB3G0031880.1 Flavonoid CHS medium pass
BnigB3G0050240.1 Flavonoid CHS medium pass
BnigB5G0042410.1 Flavonoid CHS low borderline
BnigB6G0034750.1 Flavonoid CHS medium pass
BnigB7G0041190.1 Flavonoid CHS medium pass
BnigB8G0025250.1 Flavonoid CHS medium pass
BnigB8G0057380.1 Flavonoid CHS medium pass
Bnigscaffold_28.10029570.1 Flavonoid CHS medium pass
BnigB2G0053020.1 Flavonoid DFR medium borderline
BnigB5G0029060.1 Flavonoid DFR low borderline
BnigB5G0049040.1 Flavonoid DFR medium borderline
BnigB5G0050050.1 Flavonoid DFR medium borderline
BnigB6G0005430.1 Flavonoid DFR medium pass
BnigB6G0037420.1 Flavonoid DFR medium borderline
Bnigscaffold_10.10002220.1 Flavonoid DFR low borderline
Bnigscaffold_434.10045650.1 Flavonoid DFR medium borderline
Bnigscaffold_434.10045670.1 Flavonoid DFR medium borderline
Bnigscaffold_57.10053750.1 Flavonoid DFR medium pass