PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
BnigB5G0006300.1 Phenylpropanoid LAC medium pass
BnigB5G0034070.1 Phenylpropanoid LAC medium pass
BnigB5G0038180.1 Phenylpropanoid LAC medium pass
BnigB5G0042490.1 Phenylpropanoid LAC medium pass
BnigB5G0043860.1 Phenylpropanoid LAC medium pass
BnigB6G0034460.1 Phenylpropanoid LAC low borderline
BnigB7G0051900.1 Phenylpropanoid LAC medium pass
BnigB8G0017220.1 Phenylpropanoid LAC medium pass
BnigB8G0018980.1 Phenylpropanoid LAC medium pass
BnigB8G0018990.1 Phenylpropanoid LAC medium pass
BnigB8G0019010.1 Phenylpropanoid LAC medium pass
BnigB8G0028630.1 Phenylpropanoid LAC medium pass
BnigB8G0030030.1 Phenylpropanoid LAC medium pass
BnigB8G0031490.1 Phenylpropanoid LAC medium pass
BnigB8G0033300.1 Phenylpropanoid LAC medium pass
BnigB8G0046840.1 Phenylpropanoid LAC medium pass
BnigB8G0059130.1 Phenylpropanoid LAC medium pass
Bnigscaffold_30.10031820.1 Phenylpropanoid LAC medium pass
Bnigscaffold_30.10031830.1 Phenylpropanoid LAC medium pass
Bnigscaffold_88.10066780.1 Phenylpropanoid LAC medium pass
BnigB2G0028390.1 Phenylpropanoid PAL high pass
BnigB2G0028400.1 Phenylpropanoid PAL medium pass
BnigB2G0050150.1 Phenylpropanoid PAL medium pass
BnigB3G0005560.1 Phenylpropanoid PAL high pass
BnigB3G0034870.1 Phenylpropanoid PAL medium pass
BnigB3G0034880.1 Phenylpropanoid PAL high pass
BnigB3G0034910.1 Phenylpropanoid PAL medium pass
BnigB3G0034920.1 Phenylpropanoid PAL medium pass
BnigB4G0007690.1 Phenylpropanoid PAL medium pass
BnigB4G0007700.1 Phenylpropanoid PAL high pass
BnigB4G0038920.1 Phenylpropanoid PAL high pass
BnigB4G0047090.1 Phenylpropanoid PAL high pass
BnigB5G0005440.1 Phenylpropanoid PAL high pass
BnigB5G0041710.1 Phenylpropanoid PAL high pass
Bnigscaffold_67.10059990.1 Phenylpropanoid PAL low borderline
BnigB1G0001520.1 Phenylpropanoid POD medium pass
BnigB1G0002740.1 Phenylpropanoid POD medium pass
BnigB1G0002750.1 Phenylpropanoid POD medium pass
BnigB1G0012730.1 Phenylpropanoid POD low borderline
BnigB1G0014590.1 Phenylpropanoid POD low borderline
BnigB1G0016680.1 Phenylpropanoid POD medium pass
BnigB1G0018230.1 Phenylpropanoid POD medium pass
BnigB1G0021980.1 Phenylpropanoid POD medium pass
BnigB1G0024850.1 Phenylpropanoid POD medium pass
BnigB1G0025600.1 Phenylpropanoid POD medium pass
BnigB1G0029810.1 Phenylpropanoid POD medium pass
BnigB1G0032490.1 Phenylpropanoid POD medium pass
BnigB1G0032690.1 Phenylpropanoid POD medium pass
BnigB1G0036400.1 Phenylpropanoid POD low borderline
BnigB1G0038210.1 Phenylpropanoid POD low borderline