PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
BnigB2G0043560.1 Rosmarinic Acid 4CL low borderline
BnigB3G0000580.1 Rosmarinic Acid 4CL low borderline
BnigB3G0011480.1 Rosmarinic Acid 4CL low borderline
BnigB3G0018810.1 Rosmarinic Acid 4CL medium pass
BnigB3G0021790.1 Rosmarinic Acid 4CL medium pass
BnigB3G0021960.1 Rosmarinic Acid 4CL medium pass
BnigB3G0049140.1 Rosmarinic Acid 4CL medium pass
BnigB4G0016480.1 Rosmarinic Acid 4CL medium pass
BnigB4G0019310.1 Rosmarinic Acid 4CL low borderline
BnigB4G0024190.1 Rosmarinic Acid 4CL low borderline
BnigB4G0024200.1 Rosmarinic Acid 4CL low borderline
BnigB4G0031980.1 Rosmarinic Acid 4CL low borderline
BnigB4G0047970.1 Rosmarinic Acid 4CL low borderline
BnigB5G0002530.1 Rosmarinic Acid 4CL low borderline
BnigB5G0010860.1 Rosmarinic Acid 4CL low borderline
BnigB5G0011560.1 Rosmarinic Acid 4CL medium pass
BnigB5G0016060.1 Rosmarinic Acid 4CL medium pass
BnigB5G0016160.1 Rosmarinic Acid 4CL medium pass
BnigB5G0016170.1 Rosmarinic Acid 4CL medium pass
BnigB5G0016180.1 Rosmarinic Acid 4CL medium pass
BnigB5G0031340.1 Rosmarinic Acid 4CL medium pass
BnigB6G0001530.1 Rosmarinic Acid 4CL low borderline
BnigB6G0006450.1 Rosmarinic Acid 4CL medium pass
BnigB6G0020610.1 Rosmarinic Acid 4CL low borderline
BnigB7G0002300.1 Rosmarinic Acid 4CL medium pass
BnigB7G0007510.1 Rosmarinic Acid 4CL medium pass
BnigB7G0021150.1 Rosmarinic Acid 4CL medium pass
BnigB7G0021350.1 Rosmarinic Acid 4CL medium pass
BnigB7G0021390.1 Rosmarinic Acid 4CL medium pass
BnigB7G0032200.1 Rosmarinic Acid 4CL medium pass
BnigB7G0032210.1 Rosmarinic Acid 4CL medium pass
BnigB7G0033660.1 Rosmarinic Acid 4CL medium pass
BnigB7G0033700.1 Rosmarinic Acid 4CL medium pass
BnigB7G0033710.1 Rosmarinic Acid 4CL medium pass
BnigB7G0033720.1 Rosmarinic Acid 4CL medium pass
BnigB7G0037390.1 Rosmarinic Acid 4CL low borderline
BnigB7G0050790.1 Rosmarinic Acid 4CL medium pass
BnigB7G0050800.1 Rosmarinic Acid 4CL medium pass
BnigB7G0050810.1 Rosmarinic Acid 4CL low borderline
BnigB8G0002130.1 Rosmarinic Acid 4CL medium pass
BnigB8G0034740.1 Rosmarinic Acid 4CL medium pass
BnigB8G0056080.1 Rosmarinic Acid 4CL low borderline
Bnigscaffold_130.10014520.1 Rosmarinic Acid 4CL low borderline
Bnigscaffold_561.10052630.1 Rosmarinic Acid 4CL low borderline
Bnigscaffold_57.10053470.1 Rosmarinic Acid 4CL medium pass
Bnigscaffold_82.10064810.1 Rosmarinic Acid 4CL low borderline
BnigB1G0002860.1 Rosmarinic Acid C4H medium pass
BnigB1G0003610.1 Rosmarinic Acid C4H low borderline
BnigB1G0008170.1 Rosmarinic Acid C4H low borderline
BnigB1G0010560.1 Rosmarinic Acid C4H low borderline