PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
BnigB8G0009350.1 Steroid DWF4/CYP90B1 low borderline
BnigB8G0011060.1 Steroid DWF4/CYP90B1 low borderline
BnigB8G0015880.1 Steroid DWF4/CYP90B1 low borderline
BnigB8G0016120.1 Steroid DWF4/CYP90B1 low borderline
BnigB8G0024810.1 Steroid DWF4/CYP90B1 medium borderline
BnigB8G0027680.1 Steroid DWF4/CYP90B1 low borderline
BnigB8G0027690.1 Steroid DWF4/CYP90B1 low borderline
BnigB8G0029400.1 Steroid DWF4/CYP90B1 low borderline
BnigB8G0032180.1 Steroid DWF4/CYP90B1 medium borderline
BnigB8G0039230.1 Steroid DWF4/CYP90B1 low borderline
BnigB8G0043910.1 Steroid DWF4/CYP90B1 low borderline
BnigB8G0043970.1 Steroid DWF4/CYP90B1 low borderline
BnigB8G0043980.1 Steroid DWF4/CYP90B1 low borderline
BnigB8G0044000.1 Steroid DWF4/CYP90B1 low borderline
BnigB8G0044020.1 Steroid DWF4/CYP90B1 low borderline
BnigB8G0044030.1 Steroid DWF4/CYP90B1 low borderline
BnigB8G0045000.1 Steroid DWF4/CYP90B1 low borderline
BnigB8G0046160.1 Steroid DWF4/CYP90B1 medium borderline
BnigB8G0051220.1 Steroid DWF4/CYP90B1 medium borderline
BnigB8G0051230.1 Steroid DWF4/CYP90B1 medium borderline
BnigB8G0053570.1 Steroid DWF4/CYP90B1 low borderline
BnigB8G0054850.1 Steroid DWF4/CYP90B1 low borderline
BnigB8G0058630.1 Steroid DWF4/CYP90B1 low borderline
BnigB8G0058640.1 Steroid DWF4/CYP90B1 low borderline
BnigB8G0059050.1 Steroid DWF4/CYP90B1 low borderline
Bnigscaffold_10.10001590.1 Steroid DWF4/CYP90B1 low borderline
Bnigscaffold_12.10012120.1 Steroid DWF4/CYP90B1 low borderline
Bnigscaffold_201.10020920.1 Steroid DWF4/CYP90B1 low borderline
Bnigscaffold_28.10028110.1 Steroid DWF4/CYP90B1 low borderline
Bnigscaffold_28.10028150.1 Steroid DWF4/CYP90B1 low borderline
Bnigscaffold_28.10028170.1 Steroid DWF4/CYP90B1 low borderline
Bnigscaffold_302.10034090.1 Steroid DWF4/CYP90B1 low borderline
Bnigscaffold_42.10043640.1 Steroid DWF4/CYP90B1 low borderline
Bnigscaffold_434.10045580.1 Steroid DWF4/CYP90B1 low borderline
Bnigscaffold_47.10048800.1 Steroid DWF4/CYP90B1 low borderline
Bnigscaffold_526.10052000.1 Steroid DWF4/CYP90B1 low borderline
Bnigscaffold_67.10059580.1 Steroid DWF4/CYP90B1 low borderline
Bnigscaffold_726.10061700.1 Steroid DWF4/CYP90B1 medium borderline
BnigB1G0001880.1 Steroid DWF5 medium borderline
BnigB6G0027540.1 Steroid DWF5 low borderline
Bnigscaffold_603.10057100.1 Steroid DWF5 medium pass
BnigB1G0017060.1 Steroid DWF7 medium pass
BnigB1G0017070.1 Steroid DWF7 medium pass
BnigB1G0017110.1 Steroid DWF7 low borderline
BnigB1G0017120.1 Steroid DWF7 medium pass
BnigB1G0041060.1 Steroid DWF7 medium pass
BnigB1G0041070.1 Steroid DWF7 medium pass
BnigB4G0008400.1 Steroid DWF7 low borderline
BnigB5G0000790.1 Steroid DWF7 medium pass
BnigB3G0005810.1 Steroid FK medium pass