PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
BnigB8G0029180.1 Steroid SMT1/SMT2/SMT3 medium pass
BnigB8G0043740.1 Steroid SMT1/SMT2/SMT3 medium pass
BnigB8G0051550.1 Steroid SMT1/SMT2/SMT3 low borderline
Bnigscaffold_10.10001930.1 Steroid SMT1/SMT2/SMT3 medium pass
Bnigscaffold_10.10002100.1 Steroid SMT1/SMT2/SMT3 medium pass
Bnigscaffold_188.10019720.1 Steroid SMT1/SMT2/SMT3 low borderline
Bnigscaffold_30.10032850.1 Steroid SMT1/SMT2/SMT3 low borderline
Bnigscaffold_323.10035610.1 Steroid SMT1/SMT2/SMT3 low borderline
Bnigscaffold_389.10040270.1 Steroid SMT1/SMT2/SMT3 low borderline
Bnigscaffold_42.10042850.1 Steroid SMT1/SMT2/SMT3 medium pass
Bnigscaffold_421.10044540.1 Steroid SMT1/SMT2/SMT3 medium pass
Bnigscaffold_427.10045250.1 Steroid SMT1/SMT2/SMT3 low borderline
Bnigscaffold_654.10058950.1 Steroid SMT1/SMT2/SMT3 medium pass
Bnigscaffold_75.10062580.1 Steroid SMT1/SMT2/SMT3 low borderline
Bnigscaffold_834.10065850.1 Steroid SMT1/SMT2/SMT3 medium pass
Bnigscaffold_988.10068760.1 Steroid SMT1/SMT2/SMT3 medium pass
BnigB1G0021930.1 Steroid SQE medium pass
BnigB2G0055250.1 Steroid SQE medium pass
BnigB5G0028110.1 Steroid SQE medium pass
BnigB6G0023860.1 Steroid SQE medium pass
BnigB6G0035710.1 Steroid SQE medium pass
BnigB6G0035720.1 Steroid SQE medium pass
BnigB6G0035730.1 Steroid SQE medium pass
BnigB8G0006070.1 Steroid SQE medium pass
BnigB8G0054190.1 Steroid SQE medium pass
Bnigscaffold_754.10063190.1 Steroid SQE medium pass
Bnigscaffold_838.10066000.1 Steroid SQE low borderline
BnigB1G0015950.1 Steroid SQS/FDFT1 high pass
BnigB2G0035190.1 Steroid SQS/FDFT1 medium pass
BnigB2G0052780.1 Steroid SQS/FDFT1 high pass
BnigB2G0052790.1 Steroid SQS/FDFT1 high pass
BnigB3G0030900.1 Steroid SQS/FDFT1 high pass
BnigB3G0048660.1 Steroid SQS/FDFT1 medium pass
BnigB6G0022170.1 Steroid SQS/FDFT1 low borderline
BnigB7G0041300.1 Steroid SQS/FDFT1 high pass
BnigB8G0022690.1 Steroid SQS/FDFT1 medium pass
Bnigscaffold_10.10000020.1 Steroid SQS/FDFT1 high pass
Bnigscaffold_10.10000030.1 Steroid SQS/FDFT1 high pass
Bnigscaffold_10.10004590.1 Steroid SQS/FDFT1 low borderline
BnigB1G0017350.1 Terpenoid AACT medium borderline
BnigB3G0037020.1 Terpenoid AACT medium borderline
BnigB4G0002020.1 Terpenoid AACT medium borderline
BnigB5G0036360.1 Terpenoid AACT medium borderline
BnigB6G0028040.1 Terpenoid AACT medium borderline
BnigB6G0031050.1 Terpenoid AACT medium borderline
BnigB6G0034820.1 Terpenoid AACT medium borderline
BnigB7G0056900.1 Terpenoid AACT medium borderline
BnigB8G0046910.1 Terpenoid AACT medium borderline
Bnigscaffold_82.10064680.1 Terpenoid AACT low borderline
BnigB1G0001280.1 Terpenoid BAHD medium pass