PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Gene Pathway Family Confidence Status
Cclescaffold_60168620.1 Alkaloid 7DLGT medium pass
Cclescaffold_60168630.1 Alkaloid 7DLGT medium pass
Cclescaffold_60168710.1 Alkaloid 7DLGT low borderline
Cclescaffold_60168880.1 Alkaloid 7DLGT low borderline
Cclescaffold_60168890.1 Alkaloid 7DLGT medium pass
Cclescaffold_60168910.1 Alkaloid 7DLGT low borderline
Cclescaffold_60179120.1 Alkaloid 7DLGT low borderline
Cclescaffold_60179350.1 Alkaloid 7DLGT low borderline
Cclescaffold_60179360.1 Alkaloid 7DLGT medium pass
Cclescaffold_60179380.1 Alkaloid 7DLGT medium pass
Cclescaffold_70182830.1 Alkaloid 7DLGT medium pass
Cclescaffold_70182840.1 Alkaloid 7DLGT medium pass
Cclescaffold_70182850.1 Alkaloid 7DLGT low borderline
Cclescaffold_70184470.1 Alkaloid 7DLGT low borderline
Cclescaffold_70186270.1 Alkaloid 7DLGT low borderline
Cclescaffold_70187040.1 Alkaloid 7DLGT medium pass
Cclescaffold_70187050.1 Alkaloid 7DLGT medium pass
Cclescaffold_70187420.1 Alkaloid 7DLGT medium pass
Cclescaffold_70193230.1 Alkaloid 7DLGT low borderline
Cclescaffold_70193260.1 Alkaloid 7DLGT low borderline
Cclescaffold_70193270.1 Alkaloid 7DLGT low borderline
Cclescaffold_70197940.1 Alkaloid 7DLGT high pass
Cclescaffold_70198380.1 Alkaloid 7DLGT low borderline
Cclescaffold_80201840.1 Alkaloid 7DLGT high pass
Cclescaffold_80201840.2 Alkaloid 7DLGT high pass
Cclescaffold_80204980.1 Alkaloid 7DLGT low borderline
Cclescaffold_80204990.1 Alkaloid 7DLGT low borderline
Cclescaffold_80205270.1 Alkaloid 7DLGT medium pass
Cclescaffold_80205300.1 Alkaloid 7DLGT medium pass
Cclescaffold_80205320.1 Alkaloid 7DLGT medium pass
Cclescaffold_80205330.1 Alkaloid 7DLGT medium pass
Cclescaffold_80205350.1 Alkaloid 7DLGT medium pass
Cclescaffold_80207800.1 Alkaloid 7DLGT medium pass
Cclescaffold_80210330.1 Alkaloid 7DLGT medium pass
Cclescaffold_80211610.1 Alkaloid 7DLGT low borderline
Cclescaffold_80211620.1 Alkaloid 7DLGT medium pass
Cclescaffold_80211630.1 Alkaloid 7DLGT medium pass
Cclescaffold_80211640.1 Alkaloid 7DLGT low borderline
Cclescaffold_80211660.1 Alkaloid 7DLGT medium pass
Cclescaffold_80211670.1 Alkaloid 7DLGT low borderline
Cclescaffold_80211690.1 Alkaloid 7DLGT medium pass
Cclescaffold_80212320.1 Alkaloid 7DLGT high pass
Cclescaffold_80215390.1 Alkaloid 7DLGT low borderline
Cclescaffold_80215400.1 Alkaloid 7DLGT low borderline
Cclescaffold_80215410.1 Alkaloid 7DLGT low borderline
Cclescaffold_80216650.1 Alkaloid 7DLGT medium pass
Cclescaffold_80218930.1 Alkaloid 7DLGT medium pass
Cclescaffold_80218940.1 Alkaloid 7DLGT medium pass
Cclescaffold_80219870.1 Alkaloid 7DLGT high pass
Cclescaffold_80219880.1 Alkaloid 7DLGT high pass