PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
Reset
Gene Pathway Family Confidence Status
Cclescaffold_10024370.1 Terpenoid AACT low borderline
Cclescaffold_20041190.1 Terpenoid AACT low borderline
Cclescaffold_20042290.1 Terpenoid AACT medium borderline
Cclescaffold_20042290.2 Terpenoid AACT medium borderline
Cclescaffold_20057290.1 Terpenoid AACT medium borderline
Cclescaffold_20057290.2 Terpenoid AACT medium borderline
Cclescaffold_20057290.3 Terpenoid AACT medium borderline
Cclescaffold_30090520.1 Terpenoid AACT medium borderline
Cclescaffold_90232210.1 Terpenoid AACT medium borderline
Cclescaffold_90235730.1 Terpenoid AACT low borderline
Cclescaffold_10001560.1 Terpenoid BAHD medium pass
Cclescaffold_10003070.1 Terpenoid BAHD low borderline
Cclescaffold_10006570.1 Terpenoid BAHD low borderline
Cclescaffold_10008570.1 Terpenoid BAHD medium pass
Cclescaffold_10008580.1 Terpenoid BAHD medium pass
Cclescaffold_10008880.1 Terpenoid BAHD medium pass
Cclescaffold_10008880.2 Terpenoid BAHD medium pass
Cclescaffold_10009440.1 Terpenoid BAHD medium pass
Cclescaffold_10009720.1 Terpenoid BAHD medium pass
Cclescaffold_10010920.1 Terpenoid BAHD medium pass
Cclescaffold_10015200.1 Terpenoid BAHD low borderline
Cclescaffold_10015200.2 Terpenoid BAHD low borderline
Cclescaffold_10016280.1 Terpenoid BAHD medium pass
Cclescaffold_10016290.1 Terpenoid BAHD medium pass
Cclescaffold_10017230.1 Terpenoid BAHD medium pass
Cclescaffold_10017240.1 Terpenoid BAHD medium pass
Cclescaffold_10020520.1 Terpenoid BAHD medium pass
Cclescaffold_10020780.1 Terpenoid BAHD medium pass
Cclescaffold_10021810.1 Terpenoid BAHD medium pass
Cclescaffold_10023640.1 Terpenoid BAHD medium pass
Cclescaffold_10023640.2 Terpenoid BAHD medium pass
Cclescaffold_10023640.3 Terpenoid BAHD medium pass
Cclescaffold_10023720.1 Terpenoid BAHD medium pass
Cclescaffold_10023780.1 Terpenoid BAHD medium pass
Cclescaffold_10023780.2 Terpenoid BAHD medium pass
Cclescaffold_10023850.1 Terpenoid BAHD medium pass
Cclescaffold_10023850.2 Terpenoid BAHD medium pass
Cclescaffold_10023850.3 Terpenoid BAHD medium pass
Cclescaffold_20029950.1 Terpenoid BAHD medium pass
Cclescaffold_20029950.2 Terpenoid BAHD medium pass
Cclescaffold_20030260.1 Terpenoid BAHD medium pass
Cclescaffold_20031090.1 Terpenoid BAHD medium pass
Cclescaffold_20031100.1 Terpenoid BAHD medium pass
Cclescaffold_20031120.1 Terpenoid BAHD medium pass
Cclescaffold_20031130.1 Terpenoid BAHD medium pass
Cclescaffold_20031140.1 Terpenoid BAHD medium pass
Cclescaffold_20031160.1 Terpenoid BAHD medium pass
Cclescaffold_20032090.1 Terpenoid BAHD low borderline
Cclescaffold_20034010.1 Terpenoid BAHD medium pass
Cclescaffold_20034280.1 Terpenoid BAHD medium pass