PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 27.27% Alkaloid pathway 24.81% Phenylpropanoid pathway 19.84% Flavonoid pathway 12.61% Rosmarinic acid pathway 9.54% Steroid pathway 5.93%
Family Distribution
C4H 6.4% C3'H/CYP98A 6.4% BAHD 5.54% IFS 4.23% CYP76 4.19% T3O 3.85% UGT 3.69% 7DLGT 3.39%
Other Families 62.3%
More Families (95)
UFGT 169 3.39% F3H 161 3.23% 4CL 153 3.07% NMT 148 2.97% POD 125 2.51% DWF4/CYP90B1 114 2.29% BR6OX2/CYP85A2 113 2.27% CODM/T6ODM 110 2.21% COMT 107 2.15% STR 100 2.01% CYP71 89 1.79% F3'H/CYP75B 86 1.73% TRI/TRII 75 1.5% IFR 71 1.42% H6H 64 1.28% CYP90D1 60 1.2% 16OMT 58 1.16% SMT1/SMT2/SMT3 56 1.12% BBE 54 1.08% CAD 53 1.06% TAT 49 0.98% SGD 47 0.94% CAS 47 0.94% G8O/G8H 43 0.86% T16H 41 0.82% HCT 41 0.82% PYKS 38 0.76% GS 36 0.72% CSE 36 0.72% COR 31 0.62% 8HGO 29 0.58% RAS 29 0.58% IO 28 0.56% ANR 26 0.52% F3'5'H/CYP75A 26 0.52% SLS 25 0.5% PMT 25 0.5% PAL 24 0.48% CCoAOMT 24 0.48% LAC 24 0.48% FNS 23 0.46% F5H/CYP84A 23 0.46% CPD/CYP90A1 23 0.46% 7DLH 21 0.42% CCR 21 0.42% ISY 20 0.4% GGPPS 18 0.36% CHS 17 0.34% CYP51G1 16 0.32% CNMT 15 0.3% NCS 15 0.3% GES 12 0.24% FPPS 12 0.24% TPS 12 0.24% MPO 11 0.22% SQE 11 0.22% SQS/FDFT1 11 0.22% TYDC_DDC 10 0.2% ANS/LDOX 10 0.2% DFR 10 0.2% BR6OX1/CYP85A1 10 0.2% AACT 10 0.2% CYP80B1 9 0.18% HYD1 9 0.18% CPR 8 0.16% HPPR 8 0.16% MVK 8 0.16% CYP719 7 0.14% HMGS 7 0.14% CHI 6 0.12% DXS 6 0.12% DXR 6 0.12% LAMT 5 0.1% ADC 5 0.1% SMO1/SMO2 5 0.1% MVD 5 0.1% MCT/IspD 5 0.1% HDR/IspH 5 0.1% ODC 3 0.06% TDC 3 0.06% ROT3/CYP90C1 3 0.06% MDS/IspF 3 0.06% HMGR 3 0.06% HDS/IspG 3 0.06% 6OMT_4OMT_SOMT 2 0.04% CPI1 2 0.04% DWF7 2 0.04% DET2 2 0.04% DWF1 2 0.04% PMK 2 0.04% DWF5 1 0.02% FK 1 0.02% CMK/IspE 1 0.02% IDI 1 0.02% GPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP719
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Protein/Isoform Record Pathway Family Confidence Status
Cclescaffold_10005240.1 Alkaloid CYP719 medium borderline
Cclescaffold_20025940.1 Alkaloid CYP719 medium borderline
Cclescaffold_20040680.1 Alkaloid CYP719 low borderline
Cclescaffold_40116300.1 Alkaloid CYP719 medium borderline
Cclescaffold_40116320.1 Alkaloid CYP719 medium borderline
Cclescaffold_50135790.1 Alkaloid CYP719 medium borderline
Cclescaffold_50135790.2 Alkaloid CYP719 medium borderline