Citrus clementina (citrus_clementina)
Imported from atlas release summary for Citrus clementina.
1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1991
Candidate Genes
C4H
6.4%
C3'H/CYP98A
6.4%
BAHD
5.54%
IFS
4.23%
CYP76
4.19%
T3O
3.85%
UGT
3.69%
7DLGT
3.39%
Other Families
62.3%
More Families (95)
UFGT
169
3.39%
F3H
161
3.23%
4CL
153
3.07%
NMT
148
2.97%
POD
125
2.51%
DWF4/CYP90B1
114
2.29%
BR6OX2/CYP85A2
113
2.27%
CODM/T6ODM
110
2.21%
COMT
107
2.15%
STR
100
2.01%
CYP71
89
1.79%
F3'H/CYP75B
86
1.73%
TRI/TRII
75
1.5%
IFR
71
1.42%
H6H
64
1.28%
CYP90D1
60
1.2%
16OMT
58
1.16%
SMT1/SMT2/SMT3
56
1.12%
BBE
54
1.08%
CAD
53
1.06%
TAT
49
0.98%
SGD
47
0.94%
CAS
47
0.94%
G8O/G8H
43
0.86%
T16H
41
0.82%
HCT
41
0.82%
PYKS
38
0.76%
GS
36
0.72%
CSE
36
0.72%
COR
31
0.62%
8HGO
29
0.58%
RAS
29
0.58%
IO
28
0.56%
ANR
26
0.52%
F3'5'H/CYP75A
26
0.52%
SLS
25
0.5%
PMT
25
0.5%
PAL
24
0.48%
CCoAOMT
24
0.48%
LAC
24
0.48%
FNS
23
0.46%
F5H/CYP84A
23
0.46%
CPD/CYP90A1
23
0.46%
7DLH
21
0.42%
CCR
21
0.42%
ISY
20
0.4%
GGPPS
18
0.36%
CHS
17
0.34%
CYP51G1
16
0.32%
CNMT
15
0.3%
NCS
15
0.3%
GES
12
0.24%
FPPS
12
0.24%
TPS
12
0.24%
MPO
11
0.22%
SQE
11
0.22%
SQS/FDFT1
11
0.22%
TYDC_DDC
10
0.2%
ANS/LDOX
10
0.2%
DFR
10
0.2%
BR6OX1/CYP85A1
10
0.2%
AACT
10
0.2%
CYP80B1
9
0.18%
HYD1
9
0.18%
CPR
8
0.16%
HPPR
8
0.16%
MVK
8
0.16%
CYP719
7
0.14%
HMGS
7
0.14%
CHI
6
0.12%
DXS
6
0.12%
DXR
6
0.12%
LAMT
5
0.1%
ADC
5
0.1%
SMO1/SMO2
5
0.1%
MVD
5
0.1%
MCT/IspD
5
0.1%
HDR/IspH
5
0.1%
ODC
3
0.06%
TDC
3
0.06%
ROT3/CYP90C1
3
0.06%
MDS/IspF
3
0.06%
HMGR
3
0.06%
HDS/IspG
3
0.06%
6OMT_4OMT_SOMT
2
0.04%
CPI1
2
0.04%
DWF7
2
0.04%
DET2
2
0.04%
DWF1
2
0.04%
PMK
2
0.04%
DWF5
1
0.02%
FK
1
0.02%
CMK/IspE
1
0.02%
IDI
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 543 | 19 | BAHD (230) | View species results |
| Alkaloid pathway | 494 | 23 | 7DLGT (91) | View species results |
| Phenylpropanoid pathway | 395 | 11 | POD (123) | View species results |
| Flavonoid pathway | 251 | 9 | UFGT (153) | View species results |
| Rosmarinic acid pathway | 190 | 7 | C4H (77) | View species results |
| Steroid pathway | 118 | 11 | CAS (43) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1987 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 346 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Cclescaffold_10003090.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_10006500.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_10006500.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_10006500.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_10006500.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_10006500.5 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_10006500.6 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_10006500.7 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_10009930.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_10010950.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_10012410.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_10017440.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_10018470.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_10018480.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| Cclescaffold_10018500.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| Cclescaffold_20030360.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_20030370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_20034710.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_20034720.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_20041980.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_20045780.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_30065610.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_30069430.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_30071140.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_30071870.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_30073050.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_30073060.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_30074000.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_30081180.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_30085940.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_40106120.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_40107230.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_40109340.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_40110520.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_40110890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_40111210.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_40111230.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_40111240.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_40111260.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_40111280.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_40111290.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_40111310.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_40119080.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_40119280.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_40119300.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cclescaffold_50134290.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_50151770.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_60158030.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_60158240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cclescaffold_60158250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |