PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
Cclescaffold_10006700.1 Flavonoid UFGT medium pass
Cclescaffold_10009410.1 Flavonoid UFGT medium pass
Cclescaffold_10011320.1 Flavonoid UFGT high pass
Cclescaffold_10022640.1 Flavonoid UFGT high pass
Cclescaffold_20028930.1 Flavonoid UFGT medium pass
Cclescaffold_20028940.1 Flavonoid UFGT medium pass
Cclescaffold_20028950.1 Flavonoid UFGT medium pass
Cclescaffold_20028960.1 Flavonoid UFGT medium pass
Cclescaffold_20028970.1 Flavonoid UFGT medium pass
Cclescaffold_20028990.1 Flavonoid UFGT low borderline
Cclescaffold_20029000.1 Flavonoid UFGT medium pass
Cclescaffold_20029010.1 Flavonoid UFGT medium pass
Cclescaffold_20029020.1 Flavonoid UFGT high pass
Cclescaffold_20029030.1 Flavonoid UFGT high pass
Cclescaffold_20029050.1 Flavonoid UFGT low borderline
Cclescaffold_20032500.1 Flavonoid UFGT high pass
Cclescaffold_20032510.1 Flavonoid UFGT low borderline
Cclescaffold_20036230.1 Flavonoid UFGT medium pass
Cclescaffold_20038060.1 Flavonoid UFGT medium pass
Cclescaffold_20038070.1 Flavonoid UFGT medium pass
Cclescaffold_20038080.1 Flavonoid UFGT high pass
Cclescaffold_20043050.1 Flavonoid UFGT high pass
Cclescaffold_20043060.1 Flavonoid UFGT medium pass
Cclescaffold_20043080.1 Flavonoid UFGT medium pass
Cclescaffold_20043100.1 Flavonoid UFGT medium pass
Cclescaffold_20043110.1 Flavonoid UFGT medium pass
Cclescaffold_20043120.1 Flavonoid UFGT high pass
Cclescaffold_20043130.1 Flavonoid UFGT high pass
Cclescaffold_20047940.1 Flavonoid UFGT medium pass
Cclescaffold_20048670.1 Flavonoid UFGT medium pass
Cclescaffold_20053570.1 Flavonoid UFGT high pass
Cclescaffold_20053580.1 Flavonoid UFGT high pass
Cclescaffold_20054020.1 Flavonoid UFGT low borderline
Cclescaffold_30061890.1 Flavonoid UFGT medium pass
Cclescaffold_30068170.1 Flavonoid UFGT medium pass
Cclescaffold_30068380.1 Flavonoid UFGT medium pass
Cclescaffold_30068390.1 Flavonoid UFGT medium pass
Cclescaffold_30068400.1 Flavonoid UFGT high pass
Cclescaffold_30068410.1 Flavonoid UFGT medium pass
Cclescaffold_30068420.1 Flavonoid UFGT medium pass
Cclescaffold_30069260.1 Flavonoid UFGT medium pass
Cclescaffold_30078010.1 Flavonoid UFGT medium pass
Cclescaffold_30078030.1 Flavonoid UFGT medium pass
Cclescaffold_30078970.1 Flavonoid UFGT medium pass
Cclescaffold_30078980.1 Flavonoid UFGT high pass
Cclescaffold_30084790.1 Flavonoid UFGT medium pass
Cclescaffold_30087100.1 Flavonoid UFGT medium pass
Cclescaffold_30087290.1 Flavonoid UFGT high pass
Cclescaffold_30098720.1 Flavonoid UFGT high pass
Cclescaffold_30098730.1 Flavonoid UFGT medium pass