PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
Reset
Gene Pathway Family Confidence Status
Cclescaffold_10016720.1 Alkaloid T16H medium borderline
Cclescaffold_10016740.1 Alkaloid T16H low borderline
Cclescaffold_10021000.1 Alkaloid T16H medium borderline
Cclescaffold_20029660.1 Alkaloid T16H medium borderline
Cclescaffold_20031450.1 Alkaloid T16H medium borderline
Cclescaffold_30063140.1 Alkaloid T16H medium borderline
Cclescaffold_30063150.1 Alkaloid T16H medium borderline
Cclescaffold_30063160.1 Alkaloid T16H medium borderline
Cclescaffold_30063180.1 Alkaloid T16H medium pass
Cclescaffold_30063200.1 Alkaloid T16H medium borderline
Cclescaffold_30063230.1 Alkaloid T16H medium borderline
Cclescaffold_30066210.1 Alkaloid T16H medium borderline
Cclescaffold_30076750.1 Alkaloid T16H medium borderline
Cclescaffold_30083090.1 Alkaloid T16H medium borderline
Cclescaffold_30083130.1 Alkaloid T16H medium borderline
Cclescaffold_30083150.1 Alkaloid T16H medium borderline
Cclescaffold_30083160.1 Alkaloid T16H medium borderline
Cclescaffold_30086610.1 Alkaloid T16H medium borderline
Cclescaffold_30100730.2 Alkaloid T16H low borderline
Cclescaffold_40105360.1 Alkaloid T16H medium borderline
Cclescaffold_40105370.1 Alkaloid T16H medium borderline
Cclescaffold_40105380.1 Alkaloid T16H medium pass
Cclescaffold_40105380.2 Alkaloid T16H medium pass
Cclescaffold_40105420.1 Alkaloid T16H medium pass
Cclescaffold_40105440.1 Alkaloid T16H medium borderline
Cclescaffold_40116330.1 Alkaloid T16H medium borderline
Cclescaffold_40116340.1 Alkaloid T16H medium borderline
Cclescaffold_40116360.1 Alkaloid T16H medium borderline
Cclescaffold_40122050.1 Alkaloid T16H low borderline
Cclescaffold_50129820.1 Alkaloid T16H medium borderline
Cclescaffold_50130530.1 Alkaloid T16H medium pass
Cclescaffold_50133580.1 Alkaloid T16H medium borderline
Cclescaffold_50138420.1 Alkaloid T16H medium borderline
Cclescaffold_50138430.1 Alkaloid T16H medium borderline
Cclescaffold_50138490.1 Alkaloid T16H medium borderline
Cclescaffold_50138530.1 Alkaloid T16H medium borderline
Cclescaffold_50153020.1 Alkaloid T16H medium borderline
Cclescaffold_80210880.2 Alkaloid T16H medium borderline
Cclescaffold_80221590.1 Alkaloid T16H medium borderline
Cclescaffold_90238900.1 Alkaloid T16H medium borderline
Cclescaffold_90240980.1 Alkaloid T16H medium borderline