PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
Cclescaffold_20027330.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Cclescaffold_20031930.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Cclescaffold_30098220.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Cclescaffold_40103720.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Cclescaffold_40104900.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Cclescaffold_40109910.1 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
Cclescaffold_40109920.1 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
Cclescaffold_50129360.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Cclescaffold_50151600.1 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Cclescaffold_60161420.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Cclescaffold_60163930.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Cclescaffold_60163960.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Cclescaffold_60163970.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Cclescaffold_60164960.1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Cclescaffold_60164970.1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Cclescaffold_60165010.1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Cclescaffold_60165420.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Cclescaffold_70182280.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Cclescaffold_70200410.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Cclescaffold_80217980.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Cclescaffold_80218250.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Cclescaffold_80219430.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Cclescaffold_80220500.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Cclescaffold_80221530.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH