PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
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Gene Pathway Family Confidence Status
Cclescaffold_10003160.1 Alkaloid H6H low borderline
Cclescaffold_10003180.1 Alkaloid H6H medium pass
Cclescaffold_10006480.1 Alkaloid H6H medium pass
Cclescaffold_10006490.1 Alkaloid H6H low borderline
Cclescaffold_10021740.1 Alkaloid H6H low borderline
Cclescaffold_20026270.1 Alkaloid H6H medium pass
Cclescaffold_20026280.1 Alkaloid H6H low borderline
Cclescaffold_20027210.1 Alkaloid H6H medium borderline
Cclescaffold_20040970.2 Alkaloid H6H medium borderline
Cclescaffold_30060440.1 Alkaloid H6H low borderline
Cclescaffold_30070720.1 Alkaloid H6H high pass
Cclescaffold_30072200.1 Alkaloid H6H medium pass
Cclescaffold_30072200.2 Alkaloid H6H medium pass
Cclescaffold_30072210.1 Alkaloid H6H medium borderline
Cclescaffold_30075490.1 Alkaloid H6H low borderline
Cclescaffold_30085390.1 Alkaloid H6H low borderline
Cclescaffold_30091940.1 Alkaloid H6H medium borderline
Cclescaffold_30092030.1 Alkaloid H6H medium pass
Cclescaffold_30092830.1 Alkaloid H6H low borderline
Cclescaffold_30099680.1 Alkaloid H6H low borderline
Cclescaffold_40104330.1 Alkaloid H6H low borderline
Cclescaffold_40111330.1 Alkaloid H6H medium borderline
Cclescaffold_40119600.1 Alkaloid H6H medium borderline
Cclescaffold_50139920.1 Alkaloid H6H medium borderline
Cclescaffold_50139960.1 Alkaloid H6H medium borderline
Cclescaffold_50139960.2 Alkaloid H6H medium borderline
Cclescaffold_50139980.1 Alkaloid H6H medium borderline
Cclescaffold_50140010.1 Alkaloid H6H medium borderline
Cclescaffold_50140010.2 Alkaloid H6H medium borderline
Cclescaffold_50148670.1 Alkaloid H6H medium borderline
Cclescaffold_50149560.1 Alkaloid H6H medium borderline
Cclescaffold_60167220.1 Alkaloid H6H low borderline
Cclescaffold_70181310.1 Alkaloid H6H high pass
Cclescaffold_70184230.1 Alkaloid H6H low borderline
Cclescaffold_70190700.1 Alkaloid H6H low borderline
Cclescaffold_70192430.1 Alkaloid H6H low borderline
Cclescaffold_70192440.1 Alkaloid H6H low borderline
Cclescaffold_70192450.1 Alkaloid H6H low borderline
Cclescaffold_70192460.1 Alkaloid H6H low borderline
Cclescaffold_70192470.1 Alkaloid H6H low borderline
Cclescaffold_70192480.1 Alkaloid H6H low borderline
Cclescaffold_70193830.1 Alkaloid H6H medium borderline
Cclescaffold_90224710.1 Alkaloid H6H medium borderline
Cclescaffold_90228810.1 Alkaloid H6H medium borderline
Cclescaffold_90228820.1 Alkaloid H6H low borderline
Cclescaffold_90228830.1 Alkaloid H6H medium pass
Cclescaffold_90228840.1 Alkaloid H6H high pass
Cclescaffold_90228860.1 Alkaloid H6H medium pass
Cclescaffold_90228880.1 Alkaloid H6H high pass
Cclescaffold_90230780.1 Alkaloid H6H low borderline