PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
Cclescaffold_20033490.1 Alkaloid IO low borderline
Cclescaffold_20033510.1 Alkaloid IO low borderline
Cclescaffold_30063120.1 Alkaloid IO low borderline
Cclescaffold_30073850.1 Alkaloid IO medium borderline
Cclescaffold_30087540.1 Alkaloid IO medium borderline
Cclescaffold_30097980.1 Alkaloid IO medium borderline
Cclescaffold_40104130.1 Alkaloid IO low borderline
Cclescaffold_40105400.1 Alkaloid IO medium borderline
Cclescaffold_40111010.1 Alkaloid IO medium borderline
Cclescaffold_40116350.1 Alkaloid IO medium borderline
Cclescaffold_40120910.1 Alkaloid IO medium borderline
Cclescaffold_40127730.1 Alkaloid IO medium borderline
Cclescaffold_50138470.1 Alkaloid IO low borderline
Cclescaffold_50138480.1 Alkaloid IO low borderline
Cclescaffold_50138510.1 Alkaloid IO medium borderline
Cclescaffold_50151590.1 Alkaloid IO medium borderline
Cclescaffold_60172770.1 Alkaloid IO medium borderline
Cclescaffold_60172780.1 Alkaloid IO medium borderline
Cclescaffold_70182540.1 Alkaloid IO low borderline
Cclescaffold_70182540.2 Alkaloid IO low borderline
Cclescaffold_70183300.1 Alkaloid IO medium borderline
Cclescaffold_70196450.1 Alkaloid IO medium borderline
Cclescaffold_70196490.1 Alkaloid IO medium borderline
Cclescaffold_70197180.1 Alkaloid IO medium borderline
Cclescaffold_70197210.1 Alkaloid IO medium borderline
Cclescaffold_80206840.1 Alkaloid IO low borderline
Cclescaffold_80220190.1 Alkaloid IO medium borderline
Cclescaffold_90233590.1 Alkaloid IO medium borderline