PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status
Cclescaffold_10016750.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_10020770.1 Alkaloid G8O/G8H low borderline
Cclescaffold_10022820.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_20025930.1 Alkaloid G8O/G8H low borderline
Cclescaffold_20029190.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_20029200.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_20029210.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_20029220.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_20029670.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_20051000.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_270057810.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_30060870.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_30075610.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_30083170.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_30088280.1 Alkaloid G8O/G8H low borderline
Cclescaffold_30090300.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_40105530.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_40105540.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_40105550.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_40105560.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_40111700.1 Alkaloid G8O/G8H low borderline
Cclescaffold_40114480.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_40116290.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_40116310.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_50131200.1 Alkaloid G8O/G8H low borderline
Cclescaffold_50131680.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_50131710.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_50136660.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_50145080.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_50148480.1 Alkaloid G8O/G8H low borderline
Cclescaffold_50150620.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_60158000.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_60177390.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_70184500.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_70197310.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_70199550.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_70199840.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_70200170.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_70200210.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_80210490.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_90231410.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_90238910.1 Alkaloid G8O/G8H medium borderline
Cclescaffold_90240950.1 Alkaloid G8O/G8H medium pass