PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FNS
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Gene Pathway Family Confidence Status
Cclescaffold_10005240.1 Flavonoid FNS medium borderline
Cclescaffold_10009380.1 Flavonoid FNS low borderline
Cclescaffold_20027670.1 Flavonoid FNS medium borderline
Cclescaffold_30058360.1 Flavonoid FNS medium borderline
Cclescaffold_30063180.1 Flavonoid FNS medium borderline
Cclescaffold_30076750.1 Flavonoid FNS medium borderline
Cclescaffold_30087540.1 Flavonoid FNS medium borderline
Cclescaffold_30088280.1 Flavonoid FNS medium borderline
Cclescaffold_30089860.2 Flavonoid FNS medium borderline
Cclescaffold_40105380.1 Flavonoid FNS medium borderline
Cclescaffold_40105380.2 Flavonoid FNS medium borderline
Cclescaffold_40116300.1 Flavonoid FNS medium borderline
Cclescaffold_40122050.1 Flavonoid FNS low borderline
Cclescaffold_50127940.1 Flavonoid FNS medium borderline
Cclescaffold_50129810.1 Flavonoid FNS medium borderline
Cclescaffold_50129850.1 Flavonoid FNS medium borderline
Cclescaffold_50145020.1 Flavonoid FNS medium borderline
Cclescaffold_60177390.1 Flavonoid FNS medium borderline
Cclescaffold_70181670.1 Flavonoid FNS medium borderline
Cclescaffold_70188490.1 Flavonoid FNS low borderline
Cclescaffold_90233590.1 Flavonoid FNS medium borderline
Cclescaffold_90238910.1 Flavonoid FNS medium borderline
Cclescaffold_90238920.1 Flavonoid FNS medium borderline