PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
Cclescaffold_10002860.1 Alkaloid PYKS low borderline
Cclescaffold_10006290.1 Alkaloid PYKS low borderline
Cclescaffold_10006290.2 Alkaloid PYKS low borderline
Cclescaffold_10019370.1 Alkaloid PYKS low borderline
Cclescaffold_10020680.1 Alkaloid PYKS low borderline
Cclescaffold_20035740.1 Alkaloid PYKS high pass
Cclescaffold_20035740.2 Alkaloid PYKS high pass
Cclescaffold_30065950.1 Alkaloid PYKS low borderline
Cclescaffold_30097850.1 Alkaloid PYKS low borderline
Cclescaffold_30097850.2 Alkaloid PYKS low borderline
Cclescaffold_30101690.1 Alkaloid PYKS high pass
Cclescaffold_40107150.1 Alkaloid PYKS low borderline
Cclescaffold_40118390.1 Alkaloid PYKS low borderline
Cclescaffold_50132160.1 Alkaloid PYKS low borderline
Cclescaffold_50143460.1 Alkaloid PYKS low borderline
Cclescaffold_50148740.1 Alkaloid PYKS high pass
Cclescaffold_50148750.1 Alkaloid PYKS high pass
Cclescaffold_50148750.2 Alkaloid PYKS high pass
Cclescaffold_50149770.1 Alkaloid PYKS high pass
Cclescaffold_50150130.1 Alkaloid PYKS high pass
Cclescaffold_50150160.1 Alkaloid PYKS high pass
Cclescaffold_50154370.1 Alkaloid PYKS low borderline
Cclescaffold_60160090.1 Alkaloid PYKS low borderline
Cclescaffold_70199310.1 Alkaloid PYKS high pass
Cclescaffold_70199330.1 Alkaloid PYKS high pass
Cclescaffold_80207670.1 Alkaloid PYKS low borderline
Cclescaffold_80209790.1 Alkaloid PYKS high pass
Cclescaffold_80210900.1 Alkaloid PYKS high pass
Cclescaffold_80210910.1 Alkaloid PYKS high pass
Cclescaffold_80210930.1 Alkaloid PYKS high pass
Cclescaffold_80210960.1 Alkaloid PYKS high pass
Cclescaffold_80218420.1 Alkaloid PYKS low borderline
Cclescaffold_90227850.1 Alkaloid PYKS low borderline
Cclescaffold_90227870.1 Alkaloid PYKS low borderline
Cclescaffold_90227880.1 Alkaloid PYKS low borderline
Cclescaffold_90227900.1 Alkaloid PYKS low borderline
Cclescaffold_90227910.1 Alkaloid PYKS low borderline
Cclescaffold_90232260.1 Alkaloid PYKS high pass