PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COMT
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Gene Pathway Family Confidence Status
Cclescaffold_10010830.1 Phenylpropanoid COMT medium pass
Cclescaffold_10011970.1 Phenylpropanoid COMT medium pass
Cclescaffold_10018410.1 Phenylpropanoid COMT medium pass
Cclescaffold_20027680.1 Phenylpropanoid COMT medium pass
Cclescaffold_20027720.1 Phenylpropanoid COMT medium pass
Cclescaffold_20027730.1 Phenylpropanoid COMT medium pass
Cclescaffold_20027770.1 Phenylpropanoid COMT medium pass
Cclescaffold_20027810.1 Phenylpropanoid COMT medium pass
Cclescaffold_20034320.1 Phenylpropanoid COMT low borderline
Cclescaffold_20034330.1 Phenylpropanoid COMT medium pass
Cclescaffold_20034340.1 Phenylpropanoid COMT low borderline
Cclescaffold_20034350.1 Phenylpropanoid COMT medium pass
Cclescaffold_20038700.1 Phenylpropanoid COMT medium pass
Cclescaffold_20038720.1 Phenylpropanoid COMT medium pass
Cclescaffold_20038730.1 Phenylpropanoid COMT low borderline
Cclescaffold_20042810.1 Phenylpropanoid COMT medium pass
Cclescaffold_20049720.1 Phenylpropanoid COMT medium pass
Cclescaffold_20053500.1 Phenylpropanoid COMT low borderline
Cclescaffold_20053520.1 Phenylpropanoid COMT medium pass
Cclescaffold_30072220.1 Phenylpropanoid COMT medium pass
Cclescaffold_30073710.1 Phenylpropanoid COMT medium pass
Cclescaffold_30074640.1 Phenylpropanoid COMT medium pass
Cclescaffold_30074650.1 Phenylpropanoid COMT medium pass
Cclescaffold_30074670.1 Phenylpropanoid COMT medium pass
Cclescaffold_30074690.1 Phenylpropanoid COMT medium pass
Cclescaffold_30074710.1 Phenylpropanoid COMT medium pass
Cclescaffold_30074720.1 Phenylpropanoid COMT medium pass
Cclescaffold_30074730.1 Phenylpropanoid COMT medium pass
Cclescaffold_30074740.1 Phenylpropanoid COMT medium pass
Cclescaffold_30074750.1 Phenylpropanoid COMT medium pass
Cclescaffold_30074760.1 Phenylpropanoid COMT medium pass
Cclescaffold_30075600.1 Phenylpropanoid COMT medium pass
Cclescaffold_30081030.1 Phenylpropanoid COMT medium pass
Cclescaffold_30081040.1 Phenylpropanoid COMT medium pass
Cclescaffold_30086600.1 Phenylpropanoid COMT medium pass
Cclescaffold_30086640.1 Phenylpropanoid COMT medium pass
Cclescaffold_30087400.1 Phenylpropanoid COMT medium pass
Cclescaffold_30087410.1 Phenylpropanoid COMT medium pass
Cclescaffold_30087420.1 Phenylpropanoid COMT medium pass
Cclescaffold_30087420.2 Phenylpropanoid COMT medium pass
Cclescaffold_30087420.3 Phenylpropanoid COMT medium pass
Cclescaffold_30087420.4 Phenylpropanoid COMT medium pass
Cclescaffold_30087430.1 Phenylpropanoid COMT medium pass
Cclescaffold_30087440.1 Phenylpropanoid COMT medium pass
Cclescaffold_30087440.2 Phenylpropanoid COMT medium pass
Cclescaffold_30087440.3 Phenylpropanoid COMT medium pass
Cclescaffold_30087450.1 Phenylpropanoid COMT medium pass
Cclescaffold_30087470.1 Phenylpropanoid COMT medium pass
Cclescaffold_30087480.1 Phenylpropanoid COMT medium pass
Cclescaffold_30087480.2 Phenylpropanoid COMT medium pass