PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Cclescaffold_80212600.1 Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
Cclescaffold_80215830.1 Terpenoid BAHD medium pass BAHD__00077__sp_Q9FNA9_PDAT1_ARATH
Cclescaffold_80216140.1 Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
Cclescaffold_80216470.1 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
Cclescaffold_80216580.1 Terpenoid BAHD medium pass BAHD__00012__sp_A1XWY7_CFAT_PETHY
Cclescaffold_80221690.1 Terpenoid BAHD medium pass BAHD__00012__sp_A1XWY7_CFAT_PETHY
Cclescaffold_90221950.1 Terpenoid BAHD medium pass BAHD__00069__sp_Q9C5W0_DGAT3_ARATH
Cclescaffold_90224140.1 Terpenoid BAHD medium pass BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
Cclescaffold_90228770.1 Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
Cclescaffold_90232220.1 Terpenoid BAHD medium pass BAHD__00021__sp_K7K424_DAT2D_SOYBN
Cclescaffold_90233740.1 Terpenoid BAHD medium pass BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH
Cclescaffold_90233770.1 Terpenoid BAHD medium pass BAHD__00015__sp_D2Y3X2_PUN1_CAPAN
Cclescaffold_90236810.1 Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Cclescaffold_90238620.1 Terpenoid BAHD medium pass BAHD__00058__sp_Q8LG50_LPAT2_ARATH
Cclescaffold_90238620.2 Terpenoid BAHD medium pass BAHD__00058__sp_Q8LG50_LPAT2_ARATH
Cclescaffold_90238620.3 Terpenoid BAHD medium pass BAHD__00058__sp_Q8LG50_LPAT2_ARATH
Cclescaffold_90239470.1 Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
Cclescaffold_90240160.1 Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Cclescaffold_90240170.1 Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Cclescaffold_90240190.1 Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Cclescaffold_90241370.1 Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Cclescaffold_90241380.1 Terpenoid BAHD low borderline BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Cclescaffold_90242820.1 Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
Cclescaffold_90243360.1 Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
Cclescaffold_90243380.1 Terpenoid BAHD low borderline BAHD__00010__sp_A0AAW1LG41_BAHD1_SAPOF
Cclescaffold_90243390.1 Terpenoid BAHD medium pass BAHD__00024__sp_O23393_BIA1_ARATH