PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CODM/T6ODM
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Gene Pathway Family Confidence Status Best Target
Cclescaffold_40103850.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_40104290.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_40104290.2 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_40117150.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_40119450.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_40127080.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_50134100.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_50134110.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_50134120.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_50134130.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_50139930.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_50139950.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Cclescaffold_50139970.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_50139970.2 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_50140050.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_50147110.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_50149870.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_60160280.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Cclescaffold_60160280.2 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Cclescaffold_60164040.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_60166010.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_60169090.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Cclescaffold_60169090.2 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Cclescaffold_70192410.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Cclescaffold_70192420.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_70193810.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_70199160.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_70199170.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_80204070.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_80206320.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_80206340.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Cclescaffold_80206350.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Cclescaffold_80206360.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_80206370.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_80208880.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_80221030.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_90222560.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Cclescaffold_90228780.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Cclescaffold_90228790.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_90228800.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Cclescaffold_90228850.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Cclescaffold_90228870.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Cclescaffold_90228870.2 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Cclescaffold_90229640.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_90230020.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_90230770.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Cclescaffold_90230950.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Cclescaffold_90231050.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Cclescaffold_90234230.1 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Cclescaffold_90234230.2 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO