PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COMT
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Gene Pathway Family Confidence Status
Cclescaffold_30087480.3 Phenylpropanoid COMT medium pass
Cclescaffold_30092600.1 Phenylpropanoid COMT low borderline
Cclescaffold_30092600.2 Phenylpropanoid COMT low borderline
Cclescaffold_30097630.1 Phenylpropanoid COMT medium pass
Cclescaffold_30097640.1 Phenylpropanoid COMT medium pass
Cclescaffold_40108200.1 Phenylpropanoid COMT medium pass
Cclescaffold_40108240.1 Phenylpropanoid COMT medium pass
Cclescaffold_40108240.2 Phenylpropanoid COMT medium pass
Cclescaffold_40108240.3 Phenylpropanoid COMT medium pass
Cclescaffold_40108270.1 Phenylpropanoid COMT medium pass
Cclescaffold_40108320.1 Phenylpropanoid COMT medium pass
Cclescaffold_40108320.2 Phenylpropanoid COMT medium pass
Cclescaffold_40108330.1 Phenylpropanoid COMT medium pass
Cclescaffold_40108330.2 Phenylpropanoid COMT medium pass
Cclescaffold_40109000.1 Phenylpropanoid COMT medium pass
Cclescaffold_40109020.1 Phenylpropanoid COMT medium pass
Cclescaffold_40109020.2 Phenylpropanoid COMT medium pass
Cclescaffold_50130790.1 Phenylpropanoid COMT low borderline
Cclescaffold_50130820.1 Phenylpropanoid COMT low borderline
Cclescaffold_50131260.1 Phenylpropanoid COMT medium pass
Cclescaffold_50132110.1 Phenylpropanoid COMT medium pass
Cclescaffold_50132120.1 Phenylpropanoid COMT medium pass
Cclescaffold_50132140.1 Phenylpropanoid COMT medium pass
Cclescaffold_50132150.1 Phenylpropanoid COMT medium pass
Cclescaffold_50137570.1 Phenylpropanoid COMT medium pass
Cclescaffold_50150140.1 Phenylpropanoid COMT medium pass
Cclescaffold_50150150.1 Phenylpropanoid COMT medium pass
Cclescaffold_50150170.1 Phenylpropanoid COMT medium pass
Cclescaffold_60159770.1 Phenylpropanoid COMT medium pass
Cclescaffold_60159780.1 Phenylpropanoid COMT medium pass
Cclescaffold_60160560.1 Phenylpropanoid COMT medium pass
Cclescaffold_60160570.1 Phenylpropanoid COMT medium pass
Cclescaffold_60162840.1 Phenylpropanoid COMT medium pass
Cclescaffold_60172520.1 Phenylpropanoid COMT medium pass
Cclescaffold_60178230.1 Phenylpropanoid COMT medium pass
Cclescaffold_70181220.1 Phenylpropanoid COMT medium pass
Cclescaffold_70199280.1 Phenylpropanoid COMT medium pass
Cclescaffold_70199290.1 Phenylpropanoid COMT medium pass
Cclescaffold_70199300.1 Phenylpropanoid COMT medium pass
Cclescaffold_7590201150.1 Phenylpropanoid COMT medium pass
Cclescaffold_80202210.1 Phenylpropanoid COMT medium pass
Cclescaffold_80212220.1 Phenylpropanoid COMT medium pass
Cclescaffold_90227760.1 Phenylpropanoid COMT low borderline
Cclescaffold_90227760.2 Phenylpropanoid COMT low borderline
Cclescaffold_90230360.1 Phenylpropanoid COMT medium pass
Cclescaffold_90230370.1 Phenylpropanoid COMT medium pass
Cclescaffold_90230380.1 Phenylpropanoid COMT medium pass
Cclescaffold_90232520.1 Phenylpropanoid COMT medium pass
Cclescaffold_90232540.1 Phenylpropanoid COMT medium pass
Cclescaffold_90232550.1 Phenylpropanoid COMT medium pass