PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP71
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Gene Pathway Family Confidence Status
Cclescaffold_30097210.3 Terpenoid CYP71 medium pass
Cclescaffold_30097210.4 Terpenoid CYP71 medium pass
Cclescaffold_30097210.5 Terpenoid CYP71 medium pass
Cclescaffold_30100810.1 Terpenoid CYP71 medium pass
Cclescaffold_40104190.1 Terpenoid CYP71 medium pass
Cclescaffold_40104190.2 Terpenoid CYP71 medium pass
Cclescaffold_40105380.1 Terpenoid CYP71 low borderline
Cclescaffold_40105380.2 Terpenoid CYP71 low borderline
Cclescaffold_40105580.1 Terpenoid CYP71 medium borderline
Cclescaffold_40120470.1 Terpenoid CYP71 medium pass
Cclescaffold_40121010.1 Terpenoid CYP71 medium borderline
Cclescaffold_40121610.1 Terpenoid CYP71 medium borderline
Cclescaffold_40122060.1 Terpenoid CYP71 medium borderline
Cclescaffold_40122070.1 Terpenoid CYP71 medium borderline
Cclescaffold_50127930.1 Terpenoid CYP71 medium borderline
Cclescaffold_50137160.1 Terpenoid CYP71 medium borderline
Cclescaffold_50137800.1 Terpenoid CYP71 medium pass
Cclescaffold_50138480.1 Terpenoid CYP71 low borderline
Cclescaffold_50150990.1 Terpenoid CYP71 medium pass
Cclescaffold_50155250.1 Terpenoid CYP71 medium borderline
Cclescaffold_60168820.1 Terpenoid CYP71 low borderline
Cclescaffold_60168820.2 Terpenoid CYP71 low borderline
Cclescaffold_60171430.1 Terpenoid CYP71 medium pass
Cclescaffold_70185230.1 Terpenoid CYP71 low borderline
Cclescaffold_70192650.1 Terpenoid CYP71 low borderline
Cclescaffold_70196600.1 Terpenoid CYP71 medium borderline
Cclescaffold_70198860.1 Terpenoid CYP71 medium borderline
Cclescaffold_70198880.1 Terpenoid CYP71 medium borderline
Cclescaffold_70199840.1 Terpenoid CYP71 medium borderline
Cclescaffold_80202890.1 Terpenoid CYP71 medium pass
Cclescaffold_80202890.2 Terpenoid CYP71 medium pass
Cclescaffold_80206110.1 Terpenoid CYP71 low borderline
Cclescaffold_80206110.2 Terpenoid CYP71 low borderline
Cclescaffold_80210010.1 Terpenoid CYP71 medium pass
Cclescaffold_80215300.1 Terpenoid CYP71 medium pass
Cclescaffold_80215300.2 Terpenoid CYP71 medium pass
Cclescaffold_80220870.1 Terpenoid CYP71 medium pass
Cclescaffold_90223120.1 Terpenoid CYP71 medium pass
Cclescaffold_90236180.1 Terpenoid CYP71 medium borderline