PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP90D1
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Gene Pathway Family Confidence Status
Cclescaffold_10009110.1 Steroid CYP90D1 low borderline
Cclescaffold_10009110.2 Steroid CYP90D1 low borderline
Cclescaffold_10009110.3 Steroid CYP90D1 low borderline
Cclescaffold_10009110.4 Steroid CYP90D1 low borderline
Cclescaffold_10009120.1 Steroid CYP90D1 medium borderline
Cclescaffold_10020770.1 Steroid CYP90D1 low borderline
Cclescaffold_20027740.1 Steroid CYP90D1 low borderline
Cclescaffold_20027760.1 Steroid CYP90D1 low borderline
Cclescaffold_20027790.1 Steroid CYP90D1 low borderline
Cclescaffold_20029200.1 Steroid CYP90D1 low borderline
Cclescaffold_20040610.1 Steroid CYP90D1 low borderline
Cclescaffold_20042670.1 Steroid CYP90D1 low borderline
Cclescaffold_20050890.1 Steroid CYP90D1 medium borderline
Cclescaffold_30063180.1 Steroid CYP90D1 low borderline
Cclescaffold_30076750.1 Steroid CYP90D1 low borderline
Cclescaffold_30086590.1 Steroid CYP90D1 low borderline
Cclescaffold_30086620.1 Steroid CYP90D1 low borderline
Cclescaffold_30088290.1 Steroid CYP90D1 low borderline
Cclescaffold_30089860.1 Steroid CYP90D1 low borderline
Cclescaffold_30089870.1 Steroid CYP90D1 low borderline
Cclescaffold_40104130.1 Steroid CYP90D1 medium borderline
Cclescaffold_40106060.1 Steroid CYP90D1 low borderline
Cclescaffold_40119830.1 Steroid CYP90D1 low borderline
Cclescaffold_50129810.1 Steroid CYP90D1 low borderline
Cclescaffold_50129820.1 Steroid CYP90D1 low borderline
Cclescaffold_50129850.1 Steroid CYP90D1 low borderline
Cclescaffold_50130540.1 Steroid CYP90D1 low borderline
Cclescaffold_50137160.1 Steroid CYP90D1 low borderline
Cclescaffold_50150330.1 Steroid CYP90D1 medium borderline
Cclescaffold_50153640.1 Steroid CYP90D1 low borderline
Cclescaffold_50153650.1 Steroid CYP90D1 low borderline
Cclescaffold_60159970.1 Steroid CYP90D1 medium borderline
Cclescaffold_60159970.2 Steroid CYP90D1 medium borderline
Cclescaffold_60159970.3 Steroid CYP90D1 medium borderline
Cclescaffold_60172780.1 Steroid CYP90D1 low borderline
Cclescaffold_70181080.1 Steroid CYP90D1 medium borderline
Cclescaffold_70188110.1 Steroid CYP90D1 medium borderline
Cclescaffold_70188110.2 Steroid CYP90D1 medium borderline
Cclescaffold_70188110.3 Steroid CYP90D1 medium borderline
Cclescaffold_70189180.1 Steroid CYP90D1 low borderline
Cclescaffold_70189190.1 Steroid CYP90D1 low borderline
Cclescaffold_70189210.1 Steroid CYP90D1 low borderline
Cclescaffold_70196450.1 Steroid CYP90D1 low borderline
Cclescaffold_70196590.1 Steroid CYP90D1 low borderline
Cclescaffold_70196600.1 Steroid CYP90D1 low borderline
Cclescaffold_70196610.1 Steroid CYP90D1 low borderline
Cclescaffold_70196730.1 Steroid CYP90D1 low borderline
Cclescaffold_70197130.1 Steroid CYP90D1 low borderline
Cclescaffold_70197310.1 Steroid CYP90D1 low borderline
Cclescaffold_70197360.1 Steroid CYP90D1 low borderline