PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Gene Pathway Family Confidence Status
Cclescaffold_10006310.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_10016710.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_10016720.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_10019690.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20025940.1 Steroid DWF4/CYP90B1 medium borderline
Cclescaffold_20027670.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20027710.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20027780.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20027800.1 Steroid DWF4/CYP90B1 medium borderline
Cclescaffold_20027820.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20028030.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20029180.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20029210.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20029220.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20029660.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20031450.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20033840.1 Steroid DWF4/CYP90B1 medium borderline
Cclescaffold_20041860.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20041870.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_20042650.1 Steroid DWF4/CYP90B1 medium borderline
Cclescaffold_20055460.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_270057780.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_270057790.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_270057800.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30060870.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30063130.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30063200.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30063220.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30066650.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30066660.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30067200.1 Steroid DWF4/CYP90B1 medium borderline
Cclescaffold_30068510.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30073850.1 Steroid DWF4/CYP90B1 medium borderline
Cclescaffold_30075610.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30081410.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30083130.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30083150.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30085860.1 Steroid DWF4/CYP90B1 medium borderline
Cclescaffold_30086610.1 Steroid DWF4/CYP90B1 medium borderline
Cclescaffold_30087560.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30088270.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30088320.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30088340.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30090300.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30100730.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30100730.2 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30100740.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_30102230.1 Steroid DWF4/CYP90B1 medium borderline
Cclescaffold_40105360.1 Steroid DWF4/CYP90B1 low borderline
Cclescaffold_40105370.1 Steroid DWF4/CYP90B1 low borderline