PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Cclescaffold_10003160.1 Flavonoid F3H low borderline
Cclescaffold_10003180.1 Flavonoid F3H medium borderline
Cclescaffold_10006480.1 Flavonoid F3H medium borderline
Cclescaffold_10007930.1 Flavonoid F3H low borderline
Cclescaffold_10007930.2 Flavonoid F3H low borderline
Cclescaffold_10007940.1 Flavonoid F3H low borderline
Cclescaffold_10008920.1 Flavonoid F3H medium borderline
Cclescaffold_10017690.1 Flavonoid F3H medium borderline
Cclescaffold_10017700.1 Flavonoid F3H medium borderline
Cclescaffold_10017710.1 Flavonoid F3H medium borderline
Cclescaffold_10020060.1 Flavonoid F3H medium borderline
Cclescaffold_10020470.1 Flavonoid F3H medium borderline
Cclescaffold_10021740.1 Flavonoid F3H low borderline
Cclescaffold_10021740.2 Flavonoid F3H low borderline
Cclescaffold_20026250.1 Flavonoid F3H medium borderline
Cclescaffold_20026260.1 Flavonoid F3H medium borderline
Cclescaffold_20026270.1 Flavonoid F3H medium borderline
Cclescaffold_20026290.1 Flavonoid F3H medium borderline
Cclescaffold_20026300.1 Flavonoid F3H medium borderline
Cclescaffold_20026310.1 Flavonoid F3H medium borderline
Cclescaffold_20027210.1 Flavonoid F3H medium borderline
Cclescaffold_20031770.1 Flavonoid F3H medium borderline
Cclescaffold_20040970.1 Flavonoid F3H medium borderline
Cclescaffold_20040970.2 Flavonoid F3H medium borderline
Cclescaffold_20044860.1 Flavonoid F3H medium borderline
Cclescaffold_20044870.1 Flavonoid F3H medium borderline
Cclescaffold_20044890.1 Flavonoid F3H medium borderline
Cclescaffold_20051250.1 Flavonoid F3H medium borderline
Cclescaffold_20054850.1 Flavonoid F3H medium borderline
Cclescaffold_20054860.1 Flavonoid F3H medium borderline
Cclescaffold_20054870.1 Flavonoid F3H medium borderline
Cclescaffold_20056420.1 Flavonoid F3H medium borderline
Cclescaffold_20056870.1 Flavonoid F3H low borderline
Cclescaffold_30060440.1 Flavonoid F3H low borderline
Cclescaffold_30065240.1 Flavonoid F3H low borderline
Cclescaffold_30065240.2 Flavonoid F3H low borderline
Cclescaffold_30065240.3 Flavonoid F3H low borderline
Cclescaffold_30066790.1 Flavonoid F3H medium borderline
Cclescaffold_30070720.1 Flavonoid F3H medium borderline
Cclescaffold_30072200.1 Flavonoid F3H medium borderline
Cclescaffold_30072200.2 Flavonoid F3H medium borderline
Cclescaffold_30072210.1 Flavonoid F3H medium borderline
Cclescaffold_30075480.1 Flavonoid F3H low borderline
Cclescaffold_30080030.1 Flavonoid F3H medium borderline
Cclescaffold_30080650.1 Flavonoid F3H medium borderline
Cclescaffold_30080660.1 Flavonoid F3H medium borderline
Cclescaffold_30080670.1 Flavonoid F3H medium borderline
Cclescaffold_30080680.1 Flavonoid F3H medium borderline
Cclescaffold_30080700.1 Flavonoid F3H medium borderline
Cclescaffold_30080710.1 Flavonoid F3H medium borderline