PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Cclescaffold_30080720.1 Flavonoid F3H medium borderline
Cclescaffold_30080730.1 Flavonoid F3H medium borderline
Cclescaffold_30080750.1 Flavonoid F3H medium borderline
Cclescaffold_30083650.1 Flavonoid F3H medium borderline
Cclescaffold_30083660.1 Flavonoid F3H medium borderline
Cclescaffold_30083660.2 Flavonoid F3H medium borderline
Cclescaffold_30083660.3 Flavonoid F3H medium borderline
Cclescaffold_30083660.4 Flavonoid F3H medium borderline
Cclescaffold_30085390.1 Flavonoid F3H low borderline
Cclescaffold_30091940.1 Flavonoid F3H medium borderline
Cclescaffold_30092030.1 Flavonoid F3H medium borderline
Cclescaffold_30097620.1 Flavonoid F3H medium borderline
Cclescaffold_30099680.1 Flavonoid F3H low borderline
Cclescaffold_30100610.1 Flavonoid F3H medium borderline
Cclescaffold_40103560.1 Flavonoid F3H medium borderline
Cclescaffold_40103850.1 Flavonoid F3H medium borderline
Cclescaffold_40104290.1 Flavonoid F3H medium borderline
Cclescaffold_40104290.2 Flavonoid F3H medium borderline
Cclescaffold_40104290.3 Flavonoid F3H medium borderline
Cclescaffold_40111330.1 Flavonoid F3H medium borderline
Cclescaffold_40111820.1 Flavonoid F3H medium borderline
Cclescaffold_40117150.1 Flavonoid F3H medium borderline
Cclescaffold_40119450.1 Flavonoid F3H medium borderline
Cclescaffold_40119600.1 Flavonoid F3H medium borderline
Cclescaffold_40127080.1 Flavonoid F3H medium borderline
Cclescaffold_50134100.1 Flavonoid F3H medium borderline
Cclescaffold_50134110.1 Flavonoid F3H medium borderline
Cclescaffold_50134130.1 Flavonoid F3H medium borderline
Cclescaffold_50139920.1 Flavonoid F3H medium borderline
Cclescaffold_50139930.1 Flavonoid F3H medium borderline
Cclescaffold_50139960.1 Flavonoid F3H medium borderline
Cclescaffold_50139960.2 Flavonoid F3H medium borderline
Cclescaffold_50139970.1 Flavonoid F3H medium borderline
Cclescaffold_50139970.2 Flavonoid F3H medium borderline
Cclescaffold_50139980.1 Flavonoid F3H medium pass
Cclescaffold_50140010.1 Flavonoid F3H medium borderline
Cclescaffold_50140010.2 Flavonoid F3H medium borderline
Cclescaffold_50140050.1 Flavonoid F3H medium borderline
Cclescaffold_50147110.1 Flavonoid F3H medium borderline
Cclescaffold_50148670.1 Flavonoid F3H medium borderline
Cclescaffold_50149560.1 Flavonoid F3H medium borderline
Cclescaffold_50149870.1 Flavonoid F3H medium pass
Cclescaffold_60160280.1 Flavonoid F3H medium borderline
Cclescaffold_60160280.2 Flavonoid F3H medium borderline
Cclescaffold_60164040.1 Flavonoid F3H medium borderline
Cclescaffold_60166010.1 Flavonoid F3H medium borderline
Cclescaffold_60169090.1 Flavonoid F3H medium borderline
Cclescaffold_60169090.2 Flavonoid F3H medium borderline
Cclescaffold_70181310.1 Flavonoid F3H medium borderline
Cclescaffold_70184230.1 Flavonoid F3H low borderline