PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Cclescaffold_70187540.1 Flavonoid F3H medium borderline
Cclescaffold_70192410.1 Flavonoid F3H medium borderline
Cclescaffold_70192420.1 Flavonoid F3H medium borderline
Cclescaffold_70192430.1 Flavonoid F3H low borderline
Cclescaffold_70192440.1 Flavonoid F3H low borderline
Cclescaffold_70192470.1 Flavonoid F3H low borderline
Cclescaffold_70192480.1 Flavonoid F3H low borderline
Cclescaffold_70193810.1 Flavonoid F3H medium borderline
Cclescaffold_70193830.1 Flavonoid F3H medium borderline
Cclescaffold_70194960.1 Flavonoid F3H medium borderline
Cclescaffold_70199160.1 Flavonoid F3H medium borderline
Cclescaffold_70199170.1 Flavonoid F3H medium borderline
Cclescaffold_80204070.1 Flavonoid F3H medium borderline
Cclescaffold_80206320.1 Flavonoid F3H medium borderline
Cclescaffold_80206340.1 Flavonoid F3H medium borderline
Cclescaffold_80206350.1 Flavonoid F3H medium borderline
Cclescaffold_80206360.1 Flavonoid F3H medium borderline
Cclescaffold_80206370.1 Flavonoid F3H medium borderline
Cclescaffold_80208880.1 Flavonoid F3H medium borderline
Cclescaffold_80221030.1 Flavonoid F3H low borderline
Cclescaffold_90222560.1 Flavonoid F3H medium borderline
Cclescaffold_90224710.1 Flavonoid F3H medium borderline
Cclescaffold_90228780.1 Flavonoid F3H medium borderline
Cclescaffold_90228790.1 Flavonoid F3H medium borderline
Cclescaffold_90228800.1 Flavonoid F3H medium borderline
Cclescaffold_90228810.1 Flavonoid F3H medium borderline
Cclescaffold_90228830.1 Flavonoid F3H medium borderline
Cclescaffold_90228840.1 Flavonoid F3H medium borderline
Cclescaffold_90228850.1 Flavonoid F3H medium borderline
Cclescaffold_90228860.1 Flavonoid F3H medium borderline
Cclescaffold_90228870.1 Flavonoid F3H medium borderline
Cclescaffold_90228870.2 Flavonoid F3H medium borderline
Cclescaffold_90228880.1 Flavonoid F3H medium borderline
Cclescaffold_90229640.1 Flavonoid F3H medium borderline
Cclescaffold_90230020.1 Flavonoid F3H medium borderline
Cclescaffold_90230770.1 Flavonoid F3H medium borderline
Cclescaffold_90230820.1 Flavonoid F3H medium borderline
Cclescaffold_90230890.1 Flavonoid F3H medium borderline
Cclescaffold_90230950.1 Flavonoid F3H medium borderline
Cclescaffold_90230980.1 Flavonoid F3H medium borderline
Cclescaffold_90231050.1 Flavonoid F3H medium borderline
Cclescaffold_90231090.1 Flavonoid F3H medium borderline
Cclescaffold_90231150.1 Flavonoid F3H medium borderline
Cclescaffold_90231200.1 Flavonoid F3H medium borderline
Cclescaffold_90233800.1 Flavonoid F3H medium borderline
Cclescaffold_90234230.1 Flavonoid F3H medium borderline
Cclescaffold_90234230.2 Flavonoid F3H medium borderline
Cclescaffold_90234310.1 Flavonoid F3H medium borderline
Cclescaffold_90234310.2 Flavonoid F3H medium borderline
Cclescaffold_90239060.1 Flavonoid F3H medium borderline