PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFR
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Gene Pathway Family Confidence Status
Cclescaffold_10000780.1 Flavonoid IFR low borderline
Cclescaffold_10000950.1 Flavonoid IFR low borderline
Cclescaffold_10000950.2 Flavonoid IFR low borderline
Cclescaffold_10000950.3 Flavonoid IFR low borderline
Cclescaffold_10000950.4 Flavonoid IFR low borderline
Cclescaffold_10023390.1 Flavonoid IFR low borderline
Cclescaffold_20030950.1 Flavonoid IFR low borderline
Cclescaffold_20030950.2 Flavonoid IFR low borderline
Cclescaffold_20030950.3 Flavonoid IFR low borderline
Cclescaffold_20054460.1 Flavonoid IFR low borderline
Cclescaffold_20055380.1 Flavonoid IFR low borderline
Cclescaffold_23550057690.1 Flavonoid IFR medium pass
Cclescaffold_30059070.1 Flavonoid IFR low borderline
Cclescaffold_30074110.1 Flavonoid IFR high pass
Cclescaffold_30074120.1 Flavonoid IFR low borderline
Cclescaffold_30074130.1 Flavonoid IFR high pass
Cclescaffold_30074140.1 Flavonoid IFR high pass
Cclescaffold_30074140.2 Flavonoid IFR high pass
Cclescaffold_30074150.1 Flavonoid IFR medium pass
Cclescaffold_30074160.1 Flavonoid IFR high pass
Cclescaffold_30074170.1 Flavonoid IFR low borderline
Cclescaffold_30074190.1 Flavonoid IFR high pass
Cclescaffold_30091010.1 Flavonoid IFR low borderline
Cclescaffold_30091010.2 Flavonoid IFR low borderline
Cclescaffold_30095100.1 Flavonoid IFR low borderline
Cclescaffold_40106420.1 Flavonoid IFR low borderline
Cclescaffold_40106420.2 Flavonoid IFR low borderline
Cclescaffold_40106420.3 Flavonoid IFR low borderline
Cclescaffold_40106420.4 Flavonoid IFR low borderline
Cclescaffold_40118860.1 Flavonoid IFR medium pass
Cclescaffold_50130300.1 Flavonoid IFR low borderline
Cclescaffold_50137810.1 Flavonoid IFR high pass
Cclescaffold_50137830.1 Flavonoid IFR high pass
Cclescaffold_50137830.2 Flavonoid IFR high pass
Cclescaffold_50138620.1 Flavonoid IFR low borderline
Cclescaffold_50144910.1 Flavonoid IFR low borderline
Cclescaffold_50144910.2 Flavonoid IFR low borderline
Cclescaffold_50144910.3 Flavonoid IFR low borderline
Cclescaffold_50154490.1 Flavonoid IFR high pass
Cclescaffold_60163040.1 Flavonoid IFR low borderline
Cclescaffold_60163890.1 Flavonoid IFR low borderline
Cclescaffold_60176450.1 Flavonoid IFR low borderline
Cclescaffold_60176450.2 Flavonoid IFR low borderline
Cclescaffold_60176450.3 Flavonoid IFR low borderline
Cclescaffold_60176450.4 Flavonoid IFR low borderline
Cclescaffold_60176450.5 Flavonoid IFR low borderline
Cclescaffold_60176450.7 Flavonoid IFR low borderline
Cclescaffold_60177410.1 Flavonoid IFR high pass
Cclescaffold_80201790.1 Flavonoid IFR medium pass
Cclescaffold_80206660.1 Flavonoid IFR low borderline