PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Gene Pathway Family Confidence Status
Cclescaffold_30080420.1 Flavonoid IFS low borderline
Cclescaffold_30080480.1 Flavonoid IFS low borderline
Cclescaffold_30080560.1 Flavonoid IFS low borderline
Cclescaffold_30080570.1 Flavonoid IFS low borderline
Cclescaffold_30081410.1 Flavonoid IFS medium borderline
Cclescaffold_30083100.1 Flavonoid IFS medium borderline
Cclescaffold_30083160.1 Flavonoid IFS low borderline
Cclescaffold_30085860.1 Flavonoid IFS low borderline
Cclescaffold_30086590.1 Flavonoid IFS medium borderline
Cclescaffold_30086610.1 Flavonoid IFS low borderline
Cclescaffold_30087550.1 Flavonoid IFS medium borderline
Cclescaffold_30087560.1 Flavonoid IFS medium borderline
Cclescaffold_30088290.1 Flavonoid IFS medium borderline
Cclescaffold_30088320.1 Flavonoid IFS medium borderline
Cclescaffold_30088340.1 Flavonoid IFS medium borderline
Cclescaffold_30089860.1 Flavonoid IFS medium borderline
Cclescaffold_30089870.1 Flavonoid IFS medium borderline
Cclescaffold_30090300.1 Flavonoid IFS low borderline
Cclescaffold_30098370.1 Flavonoid IFS medium borderline
Cclescaffold_30099550.1 Flavonoid IFS low borderline
Cclescaffold_30100730.1 Flavonoid IFS low borderline
Cclescaffold_30100730.2 Flavonoid IFS low borderline
Cclescaffold_30100740.1 Flavonoid IFS low borderline
Cclescaffold_30102580.1 Flavonoid IFS low borderline
Cclescaffold_40104130.1 Flavonoid IFS low borderline
Cclescaffold_40105360.1 Flavonoid IFS medium borderline
Cclescaffold_40105370.1 Flavonoid IFS medium borderline
Cclescaffold_40105400.1 Flavonoid IFS medium borderline
Cclescaffold_40105440.1 Flavonoid IFS medium borderline
Cclescaffold_40105580.1 Flavonoid IFS medium borderline
Cclescaffold_40108980.1 Flavonoid IFS medium borderline
Cclescaffold_40110790.1 Flavonoid IFS low borderline
Cclescaffold_40111690.1 Flavonoid IFS low borderline
Cclescaffold_40111700.1 Flavonoid IFS low borderline
Cclescaffold_40111710.1 Flavonoid IFS low borderline
Cclescaffold_40111720.1 Flavonoid IFS low borderline
Cclescaffold_40113800.1 Flavonoid IFS medium borderline
Cclescaffold_40113810.1 Flavonoid IFS medium borderline
Cclescaffold_40113820.1 Flavonoid IFS medium borderline
Cclescaffold_40113830.1 Flavonoid IFS medium borderline
Cclescaffold_40113840.1 Flavonoid IFS medium borderline
Cclescaffold_40113850.1 Flavonoid IFS medium borderline
Cclescaffold_40114810.1 Flavonoid IFS low borderline
Cclescaffold_40116290.1 Flavonoid IFS medium borderline
Cclescaffold_40116350.1 Flavonoid IFS medium pass
Cclescaffold_40117770.1 Flavonoid IFS low borderline
Cclescaffold_40119820.1 Flavonoid IFS low borderline
Cclescaffold_40119970.1 Flavonoid IFS low borderline
Cclescaffold_40121010.1 Flavonoid IFS medium borderline
Cclescaffold_40121970.1 Flavonoid IFS low borderline