PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Cclescaffold_80208540.1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Cclescaffold_80208540.2 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Cclescaffold_80214650.1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Cclescaffold_80215900.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Cclescaffold_80215910.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Cclescaffold_80215920.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Cclescaffold_80215930.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Cclescaffold_80215940.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Cclescaffold_80218010.1 Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
Cclescaffold_90222340.1 Phenylpropanoid POD medium pass POD__00007__sp_P0C5C9_REHYA_ORYSJ
Cclescaffold_90225210.1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Cclescaffold_90225220.1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Cclescaffold_90226210.1 Phenylpropanoid POD medium pass POD__00023__sp_Q9M7T0_PRX2F_ARATH
Cclescaffold_90226210.2 Phenylpropanoid POD medium pass POD__00023__sp_Q9M7T0_PRX2F_ARATH
Cclescaffold_90227650.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Cclescaffold_90231890.1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Cclescaffold_90231890.2 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Cclescaffold_90231890.3 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Cclescaffold_90232480.1 Phenylpropanoid POD medium pass POD__00003__sp_A9PCL4_PRX2_POPTR
Cclescaffold_90234470.1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Cclescaffold_90234480.1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Cclescaffold_90234480.2 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Cclescaffold_90234490.1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Cclescaffold_90241670.1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Cclescaffold_90245130.1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA