PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Cclescaffold_10000310.1 Alkaloid T3O low borderline
Cclescaffold_10005600.1 Alkaloid T3O low borderline
Cclescaffold_10009110.1 Alkaloid T3O medium borderline
Cclescaffold_10009110.2 Alkaloid T3O medium borderline
Cclescaffold_10009110.3 Alkaloid T3O medium borderline
Cclescaffold_10009110.4 Alkaloid T3O medium borderline
Cclescaffold_10009120.1 Alkaloid T3O medium borderline
Cclescaffold_10010610.1 Alkaloid T3O medium borderline
Cclescaffold_10014030.1 Alkaloid T3O low borderline
Cclescaffold_10014990.1 Alkaloid T3O medium pass
Cclescaffold_10016680.1 Alkaloid T3O medium borderline
Cclescaffold_10016690.1 Alkaloid T3O medium borderline
Cclescaffold_10016700.1 Alkaloid T3O medium borderline
Cclescaffold_10016710.1 Alkaloid T3O medium borderline
Cclescaffold_10016730.1 Alkaloid T3O medium borderline
Cclescaffold_10016760.1 Alkaloid T3O medium borderline
Cclescaffold_10016770.1 Alkaloid T3O medium borderline
Cclescaffold_10018400.1 Alkaloid T3O medium borderline
Cclescaffold_20027670.1 Alkaloid T3O medium borderline
Cclescaffold_20027710.1 Alkaloid T3O medium borderline
Cclescaffold_20027740.1 Alkaloid T3O medium borderline
Cclescaffold_20027760.1 Alkaloid T3O medium borderline
Cclescaffold_20027780.1 Alkaloid T3O medium borderline
Cclescaffold_20027790.1 Alkaloid T3O medium borderline
Cclescaffold_20027800.1 Alkaloid T3O medium borderline
Cclescaffold_20027820.1 Alkaloid T3O medium borderline
Cclescaffold_20029180.1 Alkaloid T3O medium borderline
Cclescaffold_20029240.1 Alkaloid T3O medium borderline
Cclescaffold_20029250.1 Alkaloid T3O medium borderline
Cclescaffold_20029260.1 Alkaloid T3O medium borderline
Cclescaffold_20029330.1 Alkaloid T3O medium borderline
Cclescaffold_20031030.1 Alkaloid T3O low borderline
Cclescaffold_20033840.1 Alkaloid T3O medium pass
Cclescaffold_20036990.1 Alkaloid T3O low borderline
Cclescaffold_20037230.1 Alkaloid T3O low borderline
Cclescaffold_20041860.1 Alkaloid T3O medium borderline
Cclescaffold_20041870.1 Alkaloid T3O medium borderline
Cclescaffold_20042650.1 Alkaloid T3O medium pass
Cclescaffold_20042670.1 Alkaloid T3O medium borderline
Cclescaffold_20045080.1 Alkaloid T3O medium borderline
Cclescaffold_20050890.1 Alkaloid T3O medium pass
Cclescaffold_20050900.1 Alkaloid T3O medium pass
Cclescaffold_20055460.1 Alkaloid T3O medium pass
Cclescaffold_20057030.1 Alkaloid T3O medium borderline
Cclescaffold_270057780.1 Alkaloid T3O medium borderline
Cclescaffold_270057790.1 Alkaloid T3O medium borderline
Cclescaffold_270057800.1 Alkaloid T3O medium borderline
Cclescaffold_30058360.1 Alkaloid T3O high pass
Cclescaffold_30063130.1 Alkaloid T3O medium borderline
Cclescaffold_30063190.1 Alkaloid T3O medium borderline