PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Cclescaffold_30063220.1 Alkaloid T3O medium borderline
Cclescaffold_30064180.1 Alkaloid T3O low borderline
Cclescaffold_30066190.1 Alkaloid T3O medium borderline
Cclescaffold_30066200.1 Alkaloid T3O medium borderline
Cclescaffold_30066650.1 Alkaloid T3O medium borderline
Cclescaffold_30066660.1 Alkaloid T3O medium borderline
Cclescaffold_30067200.1 Alkaloid T3O medium pass
Cclescaffold_30068510.1 Alkaloid T3O medium borderline
Cclescaffold_30068910.1 Alkaloid T3O medium borderline
Cclescaffold_30076730.1 Alkaloid T3O medium borderline
Cclescaffold_30076760.1 Alkaloid T3O medium borderline
Cclescaffold_30081410.1 Alkaloid T3O medium borderline
Cclescaffold_30083100.1 Alkaloid T3O medium borderline
Cclescaffold_30084620.1 Alkaloid T3O medium borderline
Cclescaffold_30085860.1 Alkaloid T3O medium pass
Cclescaffold_30086590.1 Alkaloid T3O medium borderline
Cclescaffold_30086620.1 Alkaloid T3O medium pass
Cclescaffold_30087550.1 Alkaloid T3O medium borderline
Cclescaffold_30087560.1 Alkaloid T3O medium borderline
Cclescaffold_30088270.1 Alkaloid T3O medium borderline
Cclescaffold_30088290.1 Alkaloid T3O medium borderline
Cclescaffold_30088320.1 Alkaloid T3O medium borderline
Cclescaffold_30088340.1 Alkaloid T3O medium borderline
Cclescaffold_30089860.1 Alkaloid T3O medium borderline
Cclescaffold_30089870.1 Alkaloid T3O medium borderline
Cclescaffold_30098370.1 Alkaloid T3O medium borderline
Cclescaffold_30102580.1 Alkaloid T3O medium pass
Cclescaffold_40105580.1 Alkaloid T3O medium borderline
Cclescaffold_40108980.1 Alkaloid T3O medium borderline
Cclescaffold_40111690.1 Alkaloid T3O medium pass
Cclescaffold_40111710.1 Alkaloid T3O medium pass
Cclescaffold_40111720.1 Alkaloid T3O medium pass
Cclescaffold_40113800.1 Alkaloid T3O medium borderline
Cclescaffold_40113810.1 Alkaloid T3O medium borderline
Cclescaffold_40113820.1 Alkaloid T3O medium borderline
Cclescaffold_40113830.1 Alkaloid T3O medium borderline
Cclescaffold_40113840.1 Alkaloid T3O medium borderline
Cclescaffold_40113850.1 Alkaloid T3O medium borderline
Cclescaffold_40114810.1 Alkaloid T3O medium pass
Cclescaffold_40117770.1 Alkaloid T3O medium pass
Cclescaffold_40120320.1 Alkaloid T3O medium borderline
Cclescaffold_40121010.1 Alkaloid T3O medium borderline
Cclescaffold_40121610.1 Alkaloid T3O medium borderline
Cclescaffold_40121970.1 Alkaloid T3O medium pass
Cclescaffold_40122060.1 Alkaloid T3O medium borderline
Cclescaffold_40122070.1 Alkaloid T3O medium borderline
Cclescaffold_50127930.1 Alkaloid T3O medium borderline
Cclescaffold_50130520.1 Alkaloid T3O medium borderline
Cclescaffold_50130540.1 Alkaloid T3O medium borderline
Cclescaffold_50131210.1 Alkaloid T3O medium borderline