PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Cclescaffold_50134510.1 Alkaloid T3O medium pass
Cclescaffold_50135760.1 Alkaloid T3O medium borderline
Cclescaffold_50137160.1 Alkaloid T3O medium borderline
Cclescaffold_50137800.1 Alkaloid T3O medium borderline
Cclescaffold_50138140.1 Alkaloid T3O medium borderline
Cclescaffold_50138440.1 Alkaloid T3O medium borderline
Cclescaffold_50138500.1 Alkaloid T3O medium borderline
Cclescaffold_50145020.1 Alkaloid T3O medium borderline
Cclescaffold_50145060.1 Alkaloid T3O medium borderline
Cclescaffold_50145070.1 Alkaloid T3O medium borderline
Cclescaffold_50147470.1 Alkaloid T3O medium borderline
Cclescaffold_50150330.1 Alkaloid T3O medium pass
Cclescaffold_50150990.1 Alkaloid T3O medium borderline
Cclescaffold_50152470.1 Alkaloid T3O medium borderline
Cclescaffold_50153640.1 Alkaloid T3O medium borderline
Cclescaffold_50153650.1 Alkaloid T3O medium borderline
Cclescaffold_50153700.1 Alkaloid T3O low borderline
Cclescaffold_50155250.1 Alkaloid T3O medium borderline
Cclescaffold_60159970.1 Alkaloid T3O medium pass
Cclescaffold_60159970.2 Alkaloid T3O medium pass
Cclescaffold_60159970.3 Alkaloid T3O low borderline
Cclescaffold_60167240.1 Alkaloid T3O medium borderline
Cclescaffold_60172270.1 Alkaloid T3O medium pass
Cclescaffold_60173790.1 Alkaloid T3O medium borderline
Cclescaffold_60173850.1 Alkaloid T3O low borderline
Cclescaffold_60176680.1 Alkaloid T3O medium pass
Cclescaffold_60176940.1 Alkaloid T3O medium pass
Cclescaffold_70181080.1 Alkaloid T3O medium pass
Cclescaffold_70181650.1 Alkaloid T3O medium borderline
Cclescaffold_70181670.1 Alkaloid T3O medium pass
Cclescaffold_70181840.1 Alkaloid T3O medium pass
Cclescaffold_70182060.1 Alkaloid T3O medium pass
Cclescaffold_70183840.1 Alkaloid T3O medium pass
Cclescaffold_70184510.1 Alkaloid T3O medium borderline
Cclescaffold_70184520.1 Alkaloid T3O medium borderline
Cclescaffold_70188110.1 Alkaloid T3O medium pass
Cclescaffold_70188110.2 Alkaloid T3O medium pass
Cclescaffold_70188110.3 Alkaloid T3O medium pass
Cclescaffold_70189180.1 Alkaloid T3O medium borderline
Cclescaffold_70189190.1 Alkaloid T3O medium borderline
Cclescaffold_70189210.1 Alkaloid T3O medium borderline
Cclescaffold_70196430.1 Alkaloid T3O medium borderline
Cclescaffold_70196590.1 Alkaloid T3O medium borderline
Cclescaffold_70196600.1 Alkaloid T3O medium borderline
Cclescaffold_70196610.1 Alkaloid T3O medium borderline
Cclescaffold_70197130.1 Alkaloid T3O medium borderline
Cclescaffold_70197360.1 Alkaloid T3O medium borderline
Cclescaffold_70198860.1 Alkaloid T3O medium borderline
Cclescaffold_70198880.1 Alkaloid T3O medium borderline
Cclescaffold_70199250.1 Alkaloid T3O low borderline