PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
Reset
Gene Pathway Family Confidence Status
Cclescaffold_70199810.1 Alkaloid T3O medium borderline
Cclescaffold_70199830.1 Alkaloid T3O medium borderline
Cclescaffold_70199850.1 Alkaloid T3O medium borderline
Cclescaffold_70199860.1 Alkaloid T3O medium borderline
Cclescaffold_70200100.1 Alkaloid T3O medium borderline
Cclescaffold_70200110.1 Alkaloid T3O medium borderline
Cclescaffold_70200120.1 Alkaloid T3O medium borderline
Cclescaffold_70200130.1 Alkaloid T3O medium borderline
Cclescaffold_80205690.1 Alkaloid T3O medium pass
Cclescaffold_80205690.2 Alkaloid T3O low borderline
Cclescaffold_80206570.1 Alkaloid T3O medium borderline
Cclescaffold_80206580.1 Alkaloid T3O medium borderline
Cclescaffold_80206600.1 Alkaloid T3O medium borderline
Cclescaffold_80208860.1 Alkaloid T3O medium borderline
Cclescaffold_80210120.1 Alkaloid T3O medium borderline
Cclescaffold_80210390.1 Alkaloid T3O medium borderline
Cclescaffold_80210430.1 Alkaloid T3O medium borderline
Cclescaffold_80210460.1 Alkaloid T3O medium borderline
Cclescaffold_80210470.1 Alkaloid T3O medium borderline
Cclescaffold_80210530.1 Alkaloid T3O medium borderline
Cclescaffold_80210540.1 Alkaloid T3O medium borderline
Cclescaffold_80210550.1 Alkaloid T3O medium borderline
Cclescaffold_80210580.1 Alkaloid T3O medium borderline
Cclescaffold_80210590.1 Alkaloid T3O medium borderline
Cclescaffold_80210600.1 Alkaloid T3O medium borderline
Cclescaffold_80210840.1 Alkaloid T3O medium borderline
Cclescaffold_80210870.1 Alkaloid T3O medium borderline
Cclescaffold_80210880.1 Alkaloid T3O medium borderline
Cclescaffold_80211200.1 Alkaloid T3O medium borderline
Cclescaffold_80215200.1 Alkaloid T3O medium pass
Cclescaffold_80215210.1 Alkaloid T3O medium pass
Cclescaffold_80219390.1 Alkaloid T3O medium pass
Cclescaffold_80219390.2 Alkaloid T3O medium pass
Cclescaffold_90236180.1 Alkaloid T3O medium borderline
Cclescaffold_90237710.1 Alkaloid T3O medium borderline
Cclescaffold_90238920.1 Alkaloid T3O medium borderline
Cclescaffold_90238940.1 Alkaloid T3O medium borderline
Cclescaffold_90240920.1 Alkaloid T3O medium borderline
Cclescaffold_90240940.1 Alkaloid T3O medium borderline
Cclescaffold_90240960.1 Alkaloid T3O medium borderline
Cclescaffold_90240990.1 Alkaloid T3O medium borderline
Cclescaffold_9350245300.1 Alkaloid T3O medium borderline