PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
Cclescaffold_30099350.1 Flavonoid UFGT low borderline
Cclescaffold_330102740.1 Flavonoid UFGT medium pass
Cclescaffold_40103090.1 Flavonoid UFGT medium pass
Cclescaffold_40103100.1 Flavonoid UFGT medium pass
Cclescaffold_40103110.1 Flavonoid UFGT medium pass
Cclescaffold_40103120.1 Flavonoid UFGT high pass
Cclescaffold_40103120.2 Flavonoid UFGT high pass
Cclescaffold_40110950.1 Flavonoid UFGT high pass
Cclescaffold_40110990.1 Flavonoid UFGT low borderline
Cclescaffold_40119610.1 Flavonoid UFGT medium pass
Cclescaffold_40123570.1 Flavonoid UFGT medium pass
Cclescaffold_40125550.1 Flavonoid UFGT high pass
Cclescaffold_50130110.1 Flavonoid UFGT medium pass
Cclescaffold_50134400.1 Flavonoid UFGT medium pass
Cclescaffold_50135480.1 Flavonoid UFGT medium pass
Cclescaffold_50137630.1 Flavonoid UFGT low borderline
Cclescaffold_50137750.1 Flavonoid UFGT low borderline
Cclescaffold_50137780.1 Flavonoid UFGT medium pass
Cclescaffold_50137880.1 Flavonoid UFGT medium pass
Cclescaffold_50137890.1 Flavonoid UFGT medium pass
Cclescaffold_50137890.2 Flavonoid UFGT medium pass
Cclescaffold_50137910.1 Flavonoid UFGT medium pass
Cclescaffold_50137910.2 Flavonoid UFGT medium pass
Cclescaffold_50137910.3 Flavonoid UFGT medium pass
Cclescaffold_50137920.1 Flavonoid UFGT medium pass
Cclescaffold_50140610.1 Flavonoid UFGT medium pass
Cclescaffold_50142730.1 Flavonoid UFGT low borderline
Cclescaffold_50142730.2 Flavonoid UFGT low borderline
Cclescaffold_50142730.3 Flavonoid UFGT low borderline
Cclescaffold_50143960.1 Flavonoid UFGT medium pass
Cclescaffold_50147450.1 Flavonoid UFGT medium pass
Cclescaffold_50147460.1 Flavonoid UFGT high pass
Cclescaffold_50147480.1 Flavonoid UFGT high pass
Cclescaffold_50147490.1 Flavonoid UFGT medium pass
Cclescaffold_50147670.1 Flavonoid UFGT medium pass
Cclescaffold_50150870.1 Flavonoid UFGT low borderline
Cclescaffold_50153990.1 Flavonoid UFGT medium pass
Cclescaffold_60158930.1 Flavonoid UFGT medium pass
Cclescaffold_60159500.1 Flavonoid UFGT high pass
Cclescaffold_60159510.1 Flavonoid UFGT medium pass
Cclescaffold_60159520.1 Flavonoid UFGT medium pass
Cclescaffold_60159530.1 Flavonoid UFGT medium pass
Cclescaffold_60159530.2 Flavonoid UFGT high pass
Cclescaffold_60160720.1 Flavonoid UFGT medium pass
Cclescaffold_60160730.1 Flavonoid UFGT medium pass
Cclescaffold_60160740.1 Flavonoid UFGT medium pass
Cclescaffold_60161090.1 Flavonoid UFGT medium pass
Cclescaffold_60161710.1 Flavonoid UFGT medium pass
Cclescaffold_60164880.1 Flavonoid UFGT medium pass
Cclescaffold_60164890.1 Flavonoid UFGT medium pass