PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

1991
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
Cclescaffold_60168590.1 Flavonoid UFGT high pass
Cclescaffold_60168600.1 Flavonoid UFGT high pass
Cclescaffold_60168620.1 Flavonoid UFGT high pass
Cclescaffold_60168710.1 Flavonoid UFGT medium pass
Cclescaffold_60168880.1 Flavonoid UFGT high pass
Cclescaffold_60168890.1 Flavonoid UFGT medium pass
Cclescaffold_60168910.1 Flavonoid UFGT medium pass
Cclescaffold_60179120.1 Flavonoid UFGT low borderline
Cclescaffold_60179350.1 Flavonoid UFGT medium pass
Cclescaffold_60179360.1 Flavonoid UFGT medium pass
Cclescaffold_60179380.1 Flavonoid UFGT medium pass
Cclescaffold_70182830.1 Flavonoid UFGT medium pass
Cclescaffold_70182840.1 Flavonoid UFGT medium pass
Cclescaffold_70182850.1 Flavonoid UFGT medium pass
Cclescaffold_70184470.1 Flavonoid UFGT high pass
Cclescaffold_70186270.1 Flavonoid UFGT high pass
Cclescaffold_70187040.1 Flavonoid UFGT high pass
Cclescaffold_70187050.1 Flavonoid UFGT medium pass
Cclescaffold_70187420.1 Flavonoid UFGT high pass
Cclescaffold_70193230.1 Flavonoid UFGT medium pass
Cclescaffold_70193260.1 Flavonoid UFGT medium pass
Cclescaffold_70193270.1 Flavonoid UFGT high pass
Cclescaffold_70197940.1 Flavonoid UFGT high pass
Cclescaffold_70198380.1 Flavonoid UFGT medium pass
Cclescaffold_80201840.1 Flavonoid UFGT medium pass
Cclescaffold_80201840.2 Flavonoid UFGT medium pass
Cclescaffold_80204980.1 Flavonoid UFGT medium pass
Cclescaffold_80204990.1 Flavonoid UFGT high pass
Cclescaffold_80205270.1 Flavonoid UFGT high pass
Cclescaffold_80205300.1 Flavonoid UFGT high pass
Cclescaffold_80205320.1 Flavonoid UFGT medium pass
Cclescaffold_80205330.1 Flavonoid UFGT high pass
Cclescaffold_80205350.1 Flavonoid UFGT medium pass
Cclescaffold_80207800.1 Flavonoid UFGT medium pass
Cclescaffold_80210330.1 Flavonoid UFGT high pass
Cclescaffold_80211610.1 Flavonoid UFGT medium pass
Cclescaffold_80211620.1 Flavonoid UFGT medium pass
Cclescaffold_80211630.1 Flavonoid UFGT medium pass
Cclescaffold_80211640.1 Flavonoid UFGT medium pass
Cclescaffold_80211660.1 Flavonoid UFGT high pass
Cclescaffold_80211670.1 Flavonoid UFGT high pass
Cclescaffold_80211690.1 Flavonoid UFGT high pass
Cclescaffold_80212320.1 Flavonoid UFGT high pass
Cclescaffold_80215390.1 Flavonoid UFGT low borderline
Cclescaffold_80215400.1 Flavonoid UFGT medium pass
Cclescaffold_80215410.1 Flavonoid UFGT high pass
Cclescaffold_80216650.1 Flavonoid UFGT medium pass
Cclescaffold_80218930.1 Flavonoid UFGT medium pass
Cclescaffold_80218940.1 Flavonoid UFGT high pass
Cclescaffold_80219870.1 Flavonoid UFGT medium pass