PlantSME Plant secondary metabolism enzyme database

Citrus clementina (citrus_clementina)

Imported from atlas release summary for Citrus clementina.

2385
Candidate Protein Records
1991
Pathway-Level Records
4984
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 543 19 BAHD (230) View species results
Alkaloid pathway 494 23 7DLGT (91) View species results
Phenylpropanoid pathway 395 11 POD (123) View species results
Flavonoid pathway 251 9 UFGT (153) View species results
Rosmarinic acid pathway 190 7 C4H (77) View species results
Steroid pathway 118 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1987 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Cclescaffold_90231050.1 Alkaloid CODM/T6ODM medium borderline
Cclescaffold_90234230.1 Alkaloid CODM/T6ODM medium borderline
Cclescaffold_90234230.2 Alkaloid CODM/T6ODM medium borderline
Cclescaffold_90234310.1 Alkaloid CODM/T6ODM medium borderline
Cclescaffold_90239060.1 Alkaloid CODM/T6ODM medium borderline
Cclescaffold_90239070.1 Alkaloid CODM/T6ODM medium borderline
Cclescaffold_90240530.1 Alkaloid CODM/T6ODM medium borderline
Cclescaffold_90240550.1 Alkaloid CODM/T6ODM medium borderline
Cclescaffold_90240560.1 Alkaloid CODM/T6ODM medium borderline
Cclescaffold_90240570.1 Alkaloid CODM/T6ODM medium borderline
Cclescaffold_90241580.1 Alkaloid CODM/T6ODM medium borderline
Cclescaffold_90244360.1 Alkaloid CODM/T6ODM medium borderline
Cclescaffold_90244380.1 Alkaloid CODM/T6ODM medium borderline
Cclescaffold_10010800.1 Alkaloid COR medium pass
Cclescaffold_10010810.1 Alkaloid COR medium pass
Cclescaffold_10010810.2 Alkaloid COR medium pass
Cclescaffold_10011760.1 Alkaloid COR medium pass
Cclescaffold_20044040.1 Alkaloid COR medium pass
Cclescaffold_20044070.1 Alkaloid COR medium pass
Cclescaffold_20044080.1 Alkaloid COR medium pass
Cclescaffold_23430057680.1 Alkaloid COR medium pass
Cclescaffold_30075500.1 Alkaloid COR medium pass
Cclescaffold_30075580.1 Alkaloid COR medium pass
Cclescaffold_40112300.1 Alkaloid COR medium pass
Cclescaffold_40112300.2 Alkaloid COR medium pass
Cclescaffold_40112300.3 Alkaloid COR medium pass
Cclescaffold_40112300.4 Alkaloid COR medium pass
Cclescaffold_40112300.5 Alkaloid COR medium pass
Cclescaffold_40123690.1 Alkaloid COR medium pass
Cclescaffold_50128280.1 Alkaloid COR medium pass
Cclescaffold_60164380.1 Alkaloid COR medium pass
Cclescaffold_60164380.2 Alkaloid COR medium pass
Cclescaffold_60164390.1 Alkaloid COR medium pass
Cclescaffold_60164390.2 Alkaloid COR medium pass
Cclescaffold_60164400.1 Alkaloid COR medium pass
Cclescaffold_60164400.2 Alkaloid COR medium pass
Cclescaffold_60164410.1 Alkaloid COR medium pass
Cclescaffold_60164430.1 Alkaloid COR medium pass
Cclescaffold_60166760.1 Alkaloid COR medium pass
Cclescaffold_80209110.1 Alkaloid COR medium pass
Cclescaffold_80209120.1 Alkaloid COR medium pass
Cclescaffold_90231760.1 Alkaloid COR medium pass
Cclescaffold_90232700.1 Alkaloid COR medium pass
Cclescaffold_90240150.1 Alkaloid COR medium pass
Cclescaffold_10005240.1 Alkaloid CYP719 medium borderline
Cclescaffold_20025940.1 Alkaloid CYP719 medium borderline
Cclescaffold_20040680.1 Alkaloid CYP719 low borderline
Cclescaffold_40116300.1 Alkaloid CYP719 medium borderline
Cclescaffold_40116320.1 Alkaloid CYP719 medium borderline
Cclescaffold_50135790.1 Alkaloid CYP719 medium borderline